Jatropha Genome Database

JcCB0545461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545461.10 - phase: 0 /partial
         (264 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g086720.1 PWWP; Regulation of nuclear pre-mRNA protei...   108   4e-24
IMGA|Medtr4g101080.1 Regulation of nuclear pre-mRNA protein chr0...    59   3e-09

>IMGA|Medtr1g086720.1 PWWP; Regulation of nuclear pre-mRNA protein
           chr01_pseudomolecule_IMGAG_V3 17263033-17247045 E
           EGN_Mt090430 20090702
          Length = 1381

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 107/212 (50%), Gaps = 13/212 (6%)

Query: 59  ENTESLRSPIHGNNQVDGMSEEAKGLKYEKRRKEASYASISDHHLHHSGVLVAQSSPVPA 118
           E T+ L+  +   N+ + MSE  K +K E   ++ +  S SD  L    V   +SSP   
Sbjct: 726 EGTKCLKPAVDDVNRANDMSEFVKEVKCEGPEEDLNSVSTSDC-LGQKAVSGIRSSPSLT 784

Query: 119 DGXXXXXXXXXXXXXXCHVSTSESANFVQHSGCSTPNHSHQKTTVCTSVEEEKIELLVPQ 178
           DG              C+VSTS+S+N + +  CS   H HQK T+   V+E K      Q
Sbjct: 785 DGGDCLPQGSPPNTSICNVSTSDSSNILHNGSCSPDVHLHQKQTLSGPVDESKYGSEATQ 844

Query: 179 LAKSAGRWSNYAEAHAALSSFEGTLGSFDQDKGEHRSSNS----------HSHVVEILAR 228
            ++S G+ S      AAL  FE  LG+  + K     +               V+EILA 
Sbjct: 845 QSRSMGKSSEAG--RAALLYFEAMLGTLKRTKESIGRATRIAIDCAKFGIADKVMEILAD 902

Query: 229 HLESESSLHRRVDLFFLVDSITQCSRGLKGKV 260
           +LE+ESSLHRRVDLFFLVDSI Q SRGLKG V
Sbjct: 903 NLETESSLHRRVDLFFLVDSIAQFSRGLKGDV 934


>IMGA|Medtr4g101080.1 Regulation of nuclear pre-mRNA protein
           chr04_pseudomolecule_IMGAG_V3 21776950-21779350 E
           EGN_Mt090430 20090702
          Length = 208

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 222 VVEILARHLESESSLHRRVDLFFLVDSITQCSRGLKG 258
           VVE+L R LE+E+S HR+VDLFFLVDSITQCS   KG
Sbjct: 3   VVELLIRKLENETSFHRKVDLFFLVDSITQCSHSQKG 39