Jatropha Genome Database

JcCB0545221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545221.10 + phase: 1 /partial
         (291 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g140450.1 early flowering 3, related chr03_pseudomole...   275   2e-74

>IMGA|Medtr3g140450.1 early flowering 3, related
           chr03_pseudomolecule_IMGAG_V3 36337998-36332692 E
           EGN_Mt090430 20090702
          Length = 688

 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/290 (53%), Positives = 185/290 (63%), Gaps = 10/290 (3%)

Query: 3   EKPNHKMECSAENAIGKTSFSSAKNGSQPSNNGSYLGNPPPVPVPTDSKMSPWCFQHSLG 62
           E  N  MECSAENA+GKTS SS KNGS  S++  + GNP    +  ++ M PW F  S G
Sbjct: 408 ENVNQNMECSAENAVGKTSISSVKNGSHLSSSTPFAGNPHHGNMAAENGMGPWGFNQSPG 467

Query: 63  HQWLVPVMSPSEGLVYKPYNAPGFLGSACGGCGPFGASPMVGNFINPTYGIPPSSHHHQG 122
           HQWL+PVMSPSEGLVYKPY  PGF G+  GG GPFGA P  G F+NP+YG+PP      G
Sbjct: 468 HQWLIPVMSPSEGLVYKPYPGPGFTGTNYGGSGPFGAPPSCGTFMNPSYGMPPPPETPPG 527

Query: 123 TGFIPGVHGYFPPYG-MPVMHPAMSGSAVEQMNYFXXXXXXXXXXXXXXXXANFNVQHQS 181
           +      H Y+PPYG MP M  A S S VE +N F                A+ N  +QS
Sbjct: 528 S------HAYYPPYGSMPFMKAAASESVVEHVNQF---SARVQSRHLSEGEADCNKHNQS 578

Query: 182 SCNLPNQKSGSVPQVPKFRASKDTELRGSTASSPGERVQGVGTVEAAEGRDALLLFPVAP 241
           SCNLP Q++G+   V   + SK+ EL+ STASSP E  QG+ T + AE RDAL LFP+ P
Sbjct: 579 SCNLPVQRNGATTHVMHHQRSKEFELQMSTASSPSEMTQGMSTGQVAEERDALPLFPMVP 638

Query: 242 ATPEGASQPQETDMPTRVIKVVPHNPRSATESAARIFKSIQAERKHKNSI 291
             PEG +Q  ET   TRVIKVVPHN RSATESAARIF+SIQ ERK  +++
Sbjct: 639 VEPEGVAQSIETGQQTRVIKVVPHNRRSATESAARIFQSIQEERKQYDTL 688