Jatropha Genome Database

JcCB0544161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0544161.10 + phase: 0 
         (443 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g125320.1 Homeodomain-like, related chr01_pseudomolec...   484   e-137
IMGA|Medtr2g117610.1 Homeodomain-like, related chr02_pseudomolec...   268   3e-72
IMGA|Medtr1g073690.1 Homeodomain-like, identical chr01_pseudomol...   197   7e-51

>IMGA|Medtr1g125320.1 Homeodomain-like, related
           chr01_pseudomolecule_IMGAG_V3 27623789-27622379 E
           EGN_Mt090430 20090702
          Length = 450

 Score =  484 bits (1246), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/434 (61%), Positives = 319/434 (73%), Gaps = 16/434 (3%)

Query: 20  LDLEGAVRIHHQTQYPHAIHNQQRPIHRQGSSVHPSIHEGFPLTIGALNNSDQTISKTNY 79
            DL G++++HHQ  +PH IH  Q   H QG S+H S+ +GFPLT+G L N DQ++S T+Y
Sbjct: 23  FDLPGSIQVHHQAHHPHTIHQHQANPH-QGLSLHSSVQDGFPLTMGPLQNCDQSMSMTDY 81

Query: 80  NKGEKMKNSASDEDEPSYTEDDGNGHSEGKKG-----LPWQRVKWTDKMVRLLITAVSYI 134
            KGE+ K   S+EDEPS+ ED  +G  EG +G      PWQRVKWTD MVRL+ITAVSYI
Sbjct: 82  GKGERGKICTSEEDEPSFMEDGFDGQHEGGRGKKGSSSPWQRVKWTDNMVRLMITAVSYI 141

Query: 135 GEDMSSDGDGGV-RRKLAILQKKGKWKLISKVMAERGFHVSRQQCEDKFNDLNKRYKKLN 193
           GED +SDG GG  RRK A+LQKKGKW+ +SKVMAERG HVS QQCEDKFNDLNKRYKKLN
Sbjct: 142 GEDRTSDGVGGSGRRKFAVLQKKGKWRCVSKVMAERGCHVSPQQCEDKFNDLNKRYKKLN 201

Query: 194 DMLGRGTSCEVVENPALLVHIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNSNRLHLPHD 253
           DMLGRGTSCEVVENPALL  I YL+EKEKD+VRKILSSK LFYEEMCSYHN NRLHLPHD
Sbjct: 202 DMLGRGTSCEVVENPALLDGIYYLSEKEKDEVRKILSSKQLFYEEMCSYHNCNRLHLPHD 261

Query: 254 PALQHSLQLALRSKDDHDNDDIQRNQKYDLDEDDQEVETDDHDEFEEKHPSHGNDRGIYG 313
           PALQ S+QLALR++DDHDNDDI+R+Q  D DED+Q+ ETD+HD F++   S G  R    
Sbjct: 262 PALQSSMQLALRNRDDHDNDDIRRSQLDDHDEDEQDAETDEHDAFKDNCASRGEGR---- 317

Query: 314 VLGGSMKRLRHGRGCKDS-CFWNP--SQD-GNKGSYPHLQIAQVDMNQMSTESTKAAWLH 369
            L GSMK+L+  +G   +  F N    QD  NKGSYP  Q+ Q D NQ+  E+ +AAWL 
Sbjct: 318 -LNGSMKKLKQNQGQNHANAFGNSFNCQDYFNKGSYPRGQMGQSDGNQVIPENMRAAWLQ 376

Query: 370 KQWMESQTXXXXXXXXXXXXXXXXXXXXRFKWKRFSRKRDHELEKLRVENERMKLENERI 429
           KQW++S+                     RFKW+RFS+++D ELEKL +ENERMKLENER+
Sbjct: 377 KQWVDSRQVQLEEQKLQIQAEKLELEKQRFKWQRFSKQKDRELEKLSLENERMKLENERM 436

Query: 430 ALELKRKEMGIVFN 443
           ALELK+KEM + FN
Sbjct: 437 ALELKQKEMSLGFN 450


>IMGA|Medtr2g117610.1 Homeodomain-like, related
           chr02_pseudomolecule_IMGAG_V3 27677141-27675468 E
           EGN_Mt090430 20090702
          Length = 445

 Score =  268 bits (686), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 180/436 (41%), Positives = 243/436 (55%), Gaps = 40/436 (9%)

Query: 16  PFGG-LDLEGAVRIHHQ-TQYPHAIHNQQRPIHRQGSSVHPSIHEGFPLTIGALNNSDQT 73
           P GG LDLE     H Q TQ  H  H+       +  S    + E   L  G      + 
Sbjct: 14  PTGGILDLESPFNRHQQQTQLAHGQHHMNMITGLENDSNQIGLIEVKNLNFG----KGKG 69

Query: 74  ISKTNYNKGEKMKNSASDEDEPSYTEDDGNGHS-----EGKKGLPWQRVKWTDKMVRLLI 128
           I+ +N++      N  S++DE  Y ED GN  +     +GKKG PWQR+KWTD +V LLI
Sbjct: 70  IASSNHDNS----NDMSEDDEHGYGED-GNCENFFDGGKGKKGSPWQRMKWTDNVVGLLI 124

Query: 129 TAVSYIGEDMSSDGDGGVRRKLAILQKKGKWKLISKVMAERGFHVSRQQCEDKFNDLNKR 188
             VS +GED +  G  GV+RK  ++QKKGKWK +SK+M  +G HVS QQCEDKFNDLNKR
Sbjct: 125 AVVSCVGEDGTISGVDGVKRKSGVVQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKR 184

Query: 189 YKKLNDMLGRGTSCEVVENPALLVHIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNSNRL 248
           YK+LN++LGRGT C+VVENPAL+  +  L+ K KDDVRKILSSKHLFY+EMC+YHN  R+
Sbjct: 185 YKRLNEILGRGTCCQVVENPALMDSMVNLSAKAKDDVRKILSSKHLFYKEMCAYHNGQRI 244

Query: 249 HLPHDPAL-QHSLQLALRSKDDHDNDDIQRNQKYDLDEDDQEVETDDHDEFEEKHPSHGN 307
              HD  L  +SL+    S+ DHD  D       D DED+ E E D+ D     +  + N
Sbjct: 245 PNSHDLDLHSYSLEHGKDSR-DHDGSD-------DEDEDNNESEDDELD-----NGININ 291

Query: 308 DRGIYGVLGGSMKRLRHGRGCKDSCFWNPSQDGNKGSYPHLQIAQVDMNQMSTESTKAAW 367
            RG  G + G   R +     +D  FW P   G       ++  + +M ++  +  K+ W
Sbjct: 292 ARGDGGRMEGFCDRNKLSE--EDGHFW-PQSIG-------MKKLESEMARVFQDPVKSPW 341

Query: 368 LHKQWMESQTXXXXXXXXXXXXXXXXXXXXRFKWKRFSRKRDHELEKLRVENERMKLENE 427
             ++W++ Q                     +FKW R+  K+D ELEKL +EN+RMK ENE
Sbjct: 342 EKREWIKQQLLQLQEQNVDFQAKAFELQKQQFKWLRYRSKKDRELEKLAMENKRMKFENE 401

Query: 428 RIALELKRKEMGIVFN 443
              L+LK++E    F+
Sbjct: 402 HRILKLKQREQEAEFS 417


>IMGA|Medtr1g073690.1 Homeodomain-like, identical
           chr01_pseudomolecule_IMGAG_V3 14753080-14751391 E
           EGN_Mt090430 20090702
          Length = 495

 Score =  197 bits (502), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/157 (59%), Positives = 123/157 (78%), Gaps = 2/157 (1%)

Query: 90  SDEDEPSYTEDDGNGHSEGKKGLPWQRVKWTDKMVRLLITAVSYIGEDMSSDG-DGGVRR 148
           SDEDEP++  ++ +G    +K  PWQR+KWTD MVRLLI AV YIG++  S+G D   ++
Sbjct: 94  SDEDEPNFPAEESSGGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPNKKK 153

Query: 149 KLAILQKKGKWKLISKVMAERGFHVSRQQCEDKFNDLNKRYKKLNDMLGRGTSCEVVENP 208
              +LQKKGKWK +S+ M E+GF+VS QQCEDKFNDLNKRYK++ND+LG+GT+C VVEN 
Sbjct: 154 SSGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQ 213

Query: 209 ALLVHIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNS 245
            LL  +D L+ K KD+VRK+L+SKHLF+ EMC+YHNS
Sbjct: 214 GLLDSMD-LSPKMKDEVRKLLNSKHLFFREMCAYHNS 249



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 344 SYPHLQIAQVDMNQMSTEST-------KAAWLHKQWMESQTXXXXXXXXXXXXXXXXXXX 396
           S+P    +   +NQM+ E +       K+ W  KQW+ ++                    
Sbjct: 378 SFPRSSSSTQLVNQMNNEISGVFQDGGKSTWEKKQWIRNRIMQLEEQKIGYESQAFQLEK 437

Query: 397 XRFKWKRFSRKRDHELEKLRVENERMKLENERIALELKRKEMGIV 441
            R KW R+S K++ E+E+ ++ENER +LENER+ L +++KE+ ++
Sbjct: 438 QRLKWARYSSKKEREMERAKLENERRRLENERMVLLIRKKELELM 482