Jatropha Genome Database

JcCB0543811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0543811.10 + phase: 0 /partial
         (148 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g089770.1 CoA-binding chr06_pseudomolecule_IMGAG_V3 1...   212   6e-56

>IMGA|Medtr6g089770.1 CoA-binding chr06_pseudomolecule_IMGAG_V3
           18694209-18699277 E EGN_Mt090430 20090702
          Length = 323

 Score =  212 bits (539), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 104/117 (88%)

Query: 27  EHLGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 86
           EHLGLPVFN+VAEAK ETKANASVIYVPPPF            LDLVVCITEGIPQHDMV
Sbjct: 73  EHLGLPVFNSVAEAKTETKANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMV 132

Query: 87  RVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 143
           RVKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV
Sbjct: 133 RVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 189