Jatropha Genome Database

JcCB0539681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0539681.10 + phase: 0 /partial
         (167 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU571152_22.1 Forkhead-associated CU571152.5 100554-94827 E...   269   6e-73
IMGA|Medtr4g024040.1 Fumarate reductase/succinate dehydrogenase ...   186   6e-48
IMGA|Medtr5g017290.1 Forkhead-associated chr05_pseudomolecule_IM...   144   2e-35
IMGA|Medtr5g017270.1 FAD-dependent pyridine nucleotide-disulphid...   137   2e-33
IMGA|Medtr5g017310.1 hypothetical protein chr05_pseudomolecule_I...    71   3e-13
IMGA|Medtr5g013370.1 Fumarate reductase/succinate dehydrogenase ...    59   8e-10
IMGA|Medtr5g013360.1 Fumarate reductase/succinate dehydrogenase ...    59   8e-10
IMGA|Medtr5g017230.1 hypothetical protein chr05_pseudomolecule_I...    47   6e-06

>IMGA|CU571152_22.1 Forkhead-associated CU571152.5 100554-94827 E
           EGN_Mt090430 20090702
          Length = 663

 Score =  269 bits (687), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 126/153 (82%), Positives = 134/153 (87%), Gaps = 1/153 (0%)

Query: 1   VRKNLFGPKDATYSDYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 60
           VR  LFG  +A Y+ YTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF
Sbjct: 249 VRTQLFGQTEAVYAGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 308

Query: 61  HKEPPGGVDRPNGKKERLLKIFEGWCDNVIDLLLATDEDAILRRDIYDRTPTLTWGRGRV 120
           HKE PGG D PN KKERLLKIF+GWCDN IDL+LATDE+AILRRDIYDR PT  WG+GRV
Sbjct: 309 HKEAPGGADEPNKKKERLLKIFKGWCDNTIDLILATDEEAILRRDIYDRIPTFKWGKGRV 368

Query: 121 TLLGDSVHAMQPNMGQGGCMAIEVNPYFLLEHL 153
           TLLGDSVHAMQPNMGQGGCMAIE + Y L + L
Sbjct: 369 TLLGDSVHAMQPNMGQGGCMAIE-DSYQLAKEL 400


>IMGA|Medtr4g024040.1 Fumarate reductase/succinate dehydrogenase
           flavoprotein, N-terminal chr04_pseudomolecule_IMGAG_V3
           5419751-5415352 E EGN_Mt090430 20090702
          Length = 465

 Score =  186 bits (471), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 110/156 (70%)

Query: 1   VRKNLFGPKDATYSDYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 60
           VR  LFG ++A YS  TCY+G+ ++VP  I ++GYRVFLG  QYFV+SDVG GKMQWYAF
Sbjct: 223 VRSKLFGWQEAKYSGVTCYSGLTNYVPPYINTIGYRVFLGLNQYFVASDVGYGKMQWYAF 282

Query: 61  HKEPPGGVDRPNGKKERLLKIFEGWCDNVIDLLLATDEDAILRRDIYDRTPTLTWGRGRV 120
           H EPP     P GKK++L+ +F  WC+ V  L+  T E+ IL+RDIYDR    TWG GRV
Sbjct: 283 HGEPPSRGHFPEGKKKKLMDLFGNWCNEVKTLISETPENMILQRDIYDRDIINTWGIGRV 342

Query: 121 TLLGDSVHAMQPNMGQGGCMAIEVNPYFLLEHLKFG 156
           TLLGD+ H MQPN+G GGCMAIE     +LE  K G
Sbjct: 343 TLLGDAAHPMQPNLGLGGCMAIEDCYQLILELDKVG 378


>IMGA|Medtr5g017290.1 Forkhead-associated
           chr05_pseudomolecule_IMGAG_V3 6182248-6184909 E
           EGN_Mt090430 20090702
          Length = 350

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 65/71 (91%), Positives = 70/71 (98%)

Query: 73  GKKERLLKIFEGWCDNVIDLLLATDEDAILRRDIYDRTPTLTWGRGRVTLLGDSVHAMQP 132
           GKKERLLKIFEGWCDN IDL++AT+E+AILRRDIYDRTPTLTWG+GRVTLLGDSVHAMQP
Sbjct: 3   GKKERLLKIFEGWCDNAIDLIVATEEEAILRRDIYDRTPTLTWGKGRVTLLGDSVHAMQP 62

Query: 133 NMGQGGCMAIE 143
           NMGQGGCMAIE
Sbjct: 63  NMGQGGCMAIE 73


>IMGA|Medtr5g017270.1 FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase chr05_pseudomolecule_IMGAG_V3
           6175728-6179564 E EGN_Mt090430 20090702
          Length = 336

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/91 (72%), Positives = 72/91 (79%)

Query: 1   VRKNLFGPKDATYSDYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 60
           VR  LFG  +ATYS YTCYTGIADFVP DIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF
Sbjct: 244 VRTKLFGSTEATYSGYTCYTGIADFVPPDIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 303

Query: 61  HKEPPGGVDRPNGKKERLLKIFEGWCDNVID 91
           H+EP GGVD PN  + +   + E   +NV D
Sbjct: 304 HQEPAGGVDTPNEIESKPAYLKEHNPNNVFD 334


>IMGA|Medtr5g017310.1 hypothetical protein
          chr05_pseudomolecule_IMGAG_V3 6187734-6188332 E
          EGN_Mt090430 20090702
          Length = 95

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/34 (91%), Positives = 32/34 (94%)

Query: 35 YRVFLGHKQYFVSSDVGAGKMQWYAFHKEPPGGV 68
          YRVFLGHKQYFVSS VGAGKMQWYAFH+EP GGV
Sbjct: 62 YRVFLGHKQYFVSSGVGAGKMQWYAFHQEPAGGV 95


>IMGA|Medtr5g013370.1 Fumarate reductase/succinate dehydrogenase
           flavoprotein, N-terminal chr05_pseudomolecule_IMGAG_V3
           4038844-4036051 E EGN_Mt090430 20090702
          Length = 422

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 16/149 (10%)

Query: 6   FGPKDATYSDYTCYTGIADFV---PADIESVGYRVFLGHKQYFVSSDVGAGKMQWY-AFH 61
            G  +  Y  Y  + G+A +    P ++  V Y    G +  +V   V   K+ W+  F+
Sbjct: 205 MGFSEPNYVGYCAFRGLASYSDGQPFELR-VNYIYGKGLRAGYVP--VSPTKVYWFVTFN 261

Query: 62  KEPPG-GVDRPNGKKERLLKIFEGWCDNVIDLLLATDEDAILRRDIYDR------TPTLT 114
              PG     P+  K++   + E W   +++++ +T +D I+   + DR      +P ++
Sbjct: 262 SSSPGPKTTEPSVLKKQAKDLVENWLPELLNIMDSTPDDTIVLTPLMDRWLWPWISPPVS 321

Query: 115 WGRGRVTLLGDSVHAMQPNMGQGGCMAIE 143
             RGRV L+GD+ H M PN+GQG C A+E
Sbjct: 322 --RGRVVLVGDAWHPMTPNIGQGACCALE 348


>IMGA|Medtr5g013360.1 Fumarate reductase/succinate dehydrogenase
           flavoprotein, N-terminal chr05_pseudomolecule_IMGAG_V3
           4034639-4032187 E EGN_Mt090430 20090702
          Length = 429

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 10/102 (9%)

Query: 50  VGAGKMQWY-AFHKEPPG-GVDRPNGKKERLLKIFEGWCDNVIDLLLATDEDAILRRDIY 107
           V   K+ W+  F+   PG     P+  K++   + E W   +++++ +T +D I+R  + 
Sbjct: 243 VSPTKVYWFICFNSSSPGPKTTEPSVLKKQAKDLVENWPPELLNIMDSTPDDTIIRTPLV 302

Query: 108 DR------TPTLTWGRGRVTLLGDSVHAMQPNMGQGGCMAIE 143
           DR      +P ++   GRV L+GD+ H M PN+GQG C A+E
Sbjct: 303 DRWLWPSTSPPVS--AGRVVLVGDAWHPMTPNLGQGACCALE 342


>IMGA|Medtr5g017230.1 hypothetical protein
          chr05_pseudomolecule_IMGAG_V3 6167843-6169025 H
          EGN_Mt090430 20090702
          Length = 75

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 35 YRVFLGHKQYFVSSDVGAGKMQWYAFHKEPPGGVD---RPNGK 74
          Y+ FLG KQY VSSD G GKMQWYAF + P   ++    P+GK
Sbjct: 31 YQGFLGLKQYSVSSDDGVGKMQWYAFQESPKNPLEVSTPPSGK 73