Jatropha Genome Database

JcCB0536531.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0536531.20 - phase: 0 /TE
         (110 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g074430.1 integrase, related chr08_pseudomolecule_IMG...    65   7e-12

>IMGA|Medtr8g074430.1 integrase, related
           chr08_pseudomolecule_IMGAG_V3 14788217-14787399 H
           EGN_Mt090430 20090702
          Length = 272

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%)

Query: 16  SRPPLFNGSNYSYWKTRMKNFIKLVDINYWRNVITGPRIAMKIVENERVRKSEEEYTEAD 75
           +RPP F+G  Y  WK RM+ F++  D + W+ +  GP     IV      KS+ E+T+ D
Sbjct: 16  TRPPFFDGKKYYIWKHRMQIFVQGTDFDAWKAIEHGPFFPTHIVNGFTKPKSKTEWTDDD 75

Query: 76  WNYISINAKAINILHCALDPSEYNKVSGCKSA 107
              +  +++A +++ CAL   E++ V  C++A
Sbjct: 76  KKKVHPDSRAKHLISCALCNDEFSNVMYCETA 107