Jatropha Genome Database

JcCB0536281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0536281.10 + phase: 2 /partial
         (156 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g013800.1 Targeting for Xklp2 chr01_pseudomolecule_IM...   146   3e-36
IMGA|Medtr3g137120.1 Targeting for Xklp2 chr03_pseudomolecule_IM...   133   3e-32
IMGA|Medtr3g137120.2 Targeting for Xklp2 chr03_pseudomolecule_IM...   133   4e-32
IMGA|Medtr1g089880.1 Targeting for Xklp2 chr01_pseudomolecule_IM...    81   2e-16
IMGA|Medtr1g089880.2 Targeting for Xklp2 chr01_pseudomolecule_IM...    81   2e-16

>IMGA|Medtr1g013800.1 Targeting for Xklp2
           chr01_pseudomolecule_IMGAG_V3 2698448-2692989 E
           EGN_Mt090430 20090702
          Length = 545

 Score =  146 bits (369), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 96/140 (68%), Gaps = 23/140 (16%)

Query: 10  RLKQTFKSISFNERQVQASKQSGKSDVASS----------------------EGLISPTA 47
           R +Q  K+ S N+RQ Q SKQ  KS+ ASS                      EG  S T 
Sbjct: 238 RPRQPIKNRSSNDRQSQLSKQPSKSEAASSDVAVEKKKPKSLKKGPLDKVQGEGESSLTN 297

Query: 48  -EDSKPRRVGALPNYGFSFKCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKETQEAE 106
            ED+KPRRVG LPNYGFSF+C ERAEKRREF +K+EEKI AKE EK++LQAKSKE+QEAE
Sbjct: 298 REDTKPRRVGTLPNYGFSFRCGERAEKRREFLTKVEEKIQAKEEEKSSLQAKSKESQEAE 357

Query: 107 IKMLRKSLNFKATPMPSFYQ 126
           IK LRKSL FKATP+P+FYQ
Sbjct: 358 IKKLRKSLTFKATPLPTFYQ 377


>IMGA|Medtr3g137120.1 Targeting for Xklp2
           chr03_pseudomolecule_IMGAG_V3 34725039-34729330 E
           EGN_Mt090430 20090702
          Length = 442

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 89/127 (70%), Gaps = 12/127 (9%)

Query: 12  KQTFKSISFNERQVQASKQSGKSDVASSEGLISPT--------AEDSKPRRV----GALP 59
           +Q   + + N++Q   SK SGK+D AS+E  +  T          D+ P +       +P
Sbjct: 137 RQPVNNRAVNDKQTHLSKHSGKTDAASTEAPMEKTRPHLKKKEPPDNFPGKTESFFWTMP 196

Query: 60  NYGFSFKCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKETQEAEIKMLRKSLNFKAT 119
            YGFSFKC+ERAE+R+EFYSKLEE+IHAKEVE++ +QAK+KE+QEAEIK LRK L FKAT
Sbjct: 197 TYGFSFKCNERAERRKEFYSKLEERIHAKEVEESNIQAKTKESQEAEIKRLRKKLAFKAT 256

Query: 120 PMPSFYQ 126
           PMPSFYQ
Sbjct: 257 PMPSFYQ 263


>IMGA|Medtr3g137120.2 Targeting for Xklp2
           chr03_pseudomolecule_IMGAG_V3 34725039-34729330 E
           EGN_Mt090430 20090702
          Length = 394

 Score =  133 bits (334), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 89/127 (70%), Gaps = 12/127 (9%)

Query: 12  KQTFKSISFNERQVQASKQSGKSDVASSEGLISPT--------AEDSKPRRV----GALP 59
           +Q   + + N++Q   SK SGK+D AS+E  +  T          D+ P +       +P
Sbjct: 89  RQPVNNRAVNDKQTHLSKHSGKTDAASTEAPMEKTRPHLKKKEPPDNFPGKTESFFWTMP 148

Query: 60  NYGFSFKCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKETQEAEIKMLRKSLNFKAT 119
            YGFSFKC+ERAE+R+EFYSKLEE+IHAKEVE++ +QAK+KE+QEAEIK LRK L FKAT
Sbjct: 149 TYGFSFKCNERAERRKEFYSKLEERIHAKEVEESNIQAKTKESQEAEIKRLRKKLAFKAT 208

Query: 120 PMPSFYQ 126
           PMPSFYQ
Sbjct: 209 PMPSFYQ 215


>IMGA|Medtr1g089880.1 Targeting for Xklp2
           chr01_pseudomolecule_IMGAG_V3 18039506-18036199 E
           EGN_Mt090430 20090702
          Length = 393

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 49/63 (77%)

Query: 64  SFKCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKETQEAEIKMLRKSLNFKATPMPS 123
           SF+  ERA++R+EFYSKLEEK  A E EKN  +A+SKE +E  IK LR+SL FKA+PMPS
Sbjct: 227 SFRSTERAQRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKASPMPS 286

Query: 124 FYQ 126
           FY 
Sbjct: 287 FYH 289


>IMGA|Medtr1g089880.2 Targeting for Xklp2
           chr01_pseudomolecule_IMGAG_V3 18039506-18036199 E
           EGN_Mt090430 20090702
          Length = 345

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 49/63 (77%)

Query: 64  SFKCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKETQEAEIKMLRKSLNFKATPMPS 123
           SF+  ERA++R+EFYSKLEEK  A E EKN  +A+SKE +E  IK LR+SL FKA+PMPS
Sbjct: 179 SFRSTERAQRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKASPMPS 238

Query: 124 FYQ 126
           FY 
Sbjct: 239 FYH 241