Jatropha Genome Database

JcCB0535351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0535351.10 - phase: 1 /pseudo/partial
         (209 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g117440.1 Ribosomal protein S2; Multi antimicrobial e...   243   3e-65
IMGA|Medtr3g028600.1 Multi antimicrobial extrusion protein MatE ...   214   3e-56
IMGA|Medtr8g037070.1 Multi antimicrobial extrusion protein MatE ...   200   5e-52
IMGA|AC235669_9.1 Multi antimicrobial extrusion protein MatE AC2...   200   5e-52
IMGA|Medtr7g076350.1 Multi antimicrobial extrusion protein MatE ...   149   1e-36
IMGA|Medtr5g106650.1 Multi antimicrobial extrusion protein MatE ...   145   1e-35
IMGA|Medtr5g106650.3 Multi antimicrobial extrusion protein MatE ...   145   2e-35
IMGA|Medtr2g117440.2 Multi antimicrobial extrusion protein MatE ...   100   9e-22

>IMGA|Medtr2g117440.1 Ribosomal protein S2; Multi antimicrobial
           extrusion protein MatE chr02_pseudomolecule_IMGAG_V3
           27589576-27585050 F EGN_Mt090430 20090702
          Length = 507

 Score =  243 bits (621), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 141/192 (73%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           +GFLL MRVIAVTFCVTLSASLAA  GST+MAAFQVCLQVWLA SLLADGLAVAGQAILA
Sbjct: 303 NGFLLFMRVIAVTFCVTLSASLAAHHGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILA 362

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
            AFA  DYEKA+ TA+RV                    FG++LFT D++VL +I +G+PF
Sbjct: 363 GAFANKDYEKASTTATRVLQMGMVLGLALAFILGTGLHFGAKLFTKDIDVLHLIRVGVPF 422

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVALTI 197
           VA TQP+N LAFVFDGVNFGASDFAYSA+SMV+VA               FIGIWVALTI
Sbjct: 423 VALTQPLNCLAFVFDGVNFGASDFAYSAFSMVIVAIISIICLLILSSAGGFIGIWVALTI 482

Query: 198 YMSLRTSAGFWR 209
           YMSLR  AGF R
Sbjct: 483 YMSLRAFAGFLR 494


>IMGA|Medtr3g028600.1 Multi antimicrobial extrusion protein MatE
           chr03_pseudomolecule_IMGAG_V3 7395363-7402490 E
           EGN_Mt090430 20090702
          Length = 540

 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 133/192 (69%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           +G LLL RVIAVTFCVTLSASLAAR G   MAAFQ CLQVW+ +SLLADGLAVA QAILA
Sbjct: 332 NGGLLLARVIAVTFCVTLSASLAARLGPIPMAAFQTCLQVWMTSSLLADGLAVAIQAILA 391

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
            +FA+ DY K T  A+R                     FG+ +F+ +V V+ +I +G+PF
Sbjct: 392 CSFAEKDYNKVTTAATRTLQMSFVLGVGLSLVVGGGLYFGAGVFSKNVAVIHLIRLGLPF 451

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVALTI 197
           VA TQPIN+LAFVFDGVN+GASDFAYSAYS+V+V+            +  FIGIW+ALTI
Sbjct: 452 VAATQPINSLAFVFDGVNYGASDFAYSAYSLVMVSIASVTSLFFLYKSKGFIGIWIALTI 511

Query: 198 YMSLRTSAGFWR 209
           YMSLR  AG WR
Sbjct: 512 YMSLRMFAGVWR 523


>IMGA|Medtr8g037070.1 Multi antimicrobial extrusion protein MatE
           chr08_pseudomolecule_IMGAG_V3 7943388-7936162 E
           EGN_Mt090430 20090702
          Length = 620

 Score =  200 bits (508), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 130/192 (67%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           +G LL+ +VIAVTFCVTL+ASLAAR GS  MAAFQ CLQVWLA+SL ADGLA+A QAILA
Sbjct: 416 NGGLLMTKVIAVTFCVTLAASLAARLGSIPMAAFQPCLQVWLASSLFADGLAIAVQAILA 475

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
            +FA+ D  K TA A+R                     FG+ +F+ ++ V+  I IG P 
Sbjct: 476 GSFAEKDCNKTTAAATRTLQFGFILGAGLSLIVGFGLYFGAGIFSKNLQVIHFIRIGAPI 535

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVALTI 197
           VA TQPIN LAFVFDGVN+GASDFAY++YS+V V+            + +FIGIW+AL+I
Sbjct: 536 VAATQPINTLAFVFDGVNYGASDFAYASYSLVTVSLVSVGVEFLLYRSNQFIGIWIALSI 595

Query: 198 YMSLRTSAGFWR 209
           YM+LR  AG WR
Sbjct: 596 YMTLRMLAGVWR 607


>IMGA|AC235669_9.1 Multi antimicrobial extrusion protein MatE
           AC235669.1 42208-45531 E EGN_Mt090430 20090702
          Length = 444

 Score =  200 bits (508), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 130/192 (67%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           +G LL+ +VIAVTFCVTL+ASLAAR GS  MAAFQ CLQVWLA+SL ADGLA+A QAILA
Sbjct: 240 NGGLLMTKVIAVTFCVTLAASLAARLGSIPMAAFQPCLQVWLASSLFADGLAIAVQAILA 299

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
            +FA+ D  K TA A+R                     FG+ +F+ ++ V+  I IG P 
Sbjct: 300 GSFAEKDCNKTTAAATRTLQFGFILGAGLSLIVGFGLYFGAGIFSKNLQVIHFIRIGAPI 359

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVALTI 197
           VA TQPIN LAFVFDGVN+GASDFAY++YS+V V+            + +FIGIW+AL+I
Sbjct: 360 VAATQPINTLAFVFDGVNYGASDFAYASYSLVTVSLVSVGVEFLLYRSNQFIGIWIALSI 419

Query: 198 YMSLRTSAGFWR 209
           YM+LR  AG WR
Sbjct: 420 YMTLRMLAGVWR 431


>IMGA|Medtr7g076350.1 Multi antimicrobial extrusion protein MatE
           chr07_pseudomolecule_IMGAG_V3 15491256-15495227 E
           EGN_Mt090430 20090702
          Length = 278

 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 111/192 (57%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           SG LL+ R +AV   +TL+ SLAA QG   MA  Q+C++VWL+ SLL D LA+AGQ++LA
Sbjct: 68  SGGLLIARTLAVFITMTLTTSLAANQGPIPMAGHQICMEVWLSISLLTDALALAGQSLLA 127

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
           ++++  +YE+A     RV                      S LF++D  VL +   GI F
Sbjct: 128 SSYSLGNYEQARLIIYRVIQIGLGAGVALSMILFFGFGPFSSLFSTDSEVLDVAQSGIWF 187

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVALTI 197
           VAG+QP+NALAFV DG+ +G SDF Y+AYSMVLV                  G+W  L +
Sbjct: 188 VAGSQPVNALAFVIDGLYYGVSDFEYAAYSMVLVGLISSVFMLVAAPVVGLPGVWAGLFL 247

Query: 198 YMSLRTSAGFWR 209
           +M+LR  AG WR
Sbjct: 248 FMALRVLAGVWR 259


>IMGA|Medtr5g106650.1 Multi antimicrobial extrusion protein MatE
           chr05_pseudomolecule_IMGAG_V3 42910856-42916844 E
           EGN_Mt090430 20090702
          Length = 584

 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 115/194 (59%), Gaps = 4/194 (2%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           SG  +L R +AV   +TL  S+AAR G  AMAA Q+C+QVWLA SLL D LAV+GQA++A
Sbjct: 341 SGGFVLGRTLAVLTTMTLGTSMAARHGPVAMAAHQICMQVWLAVSLLTDALAVSGQALIA 400

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGS--RLFTSDVNVLRMISIGI 135
           ++ ++ +Y+        V                   SFGS   LFT D+ VL+++  G+
Sbjct: 401 SSLSRHEYKAVKEITHFV--LKIGLLTGICLTAILGASFGSLATLFTQDIEVLQVVRTGV 458

Query: 136 PFVAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVAL 195
            FV+ +QP+NALA++FDG+++G SDF Y+A+SM+ V              +   G+W+ L
Sbjct: 459 LFVSASQPLNALAYIFDGLHYGVSDFRYAAFSMMFVGAVSSAFLVFSPSHFGLRGVWLGL 518

Query: 196 TIYMSLRTSAGFWR 209
           T++M+LR  AG  R
Sbjct: 519 TLFMALRVVAGSVR 532


>IMGA|Medtr5g106650.3 Multi antimicrobial extrusion protein MatE
           chr05_pseudomolecule_IMGAG_V3 42910856-42916844 E
           EGN_Mt090430 20090702
          Length = 295

 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 4/192 (2%)

Query: 17  PSGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAIL 76
            SG  +L R +AV   +TL  S+AAR G  AMAA Q+C+QVWLA SLL D LAV+GQA++
Sbjct: 51  KSGGFVLGRTLAVLTTMTLGTSMAARHGPVAMAAHQICMQVWLAVSLLTDALAVSGQALI 110

Query: 77  ATAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGS--RLFTSDVNVLRMISIG 134
           A++ ++ +Y+        V                   SFGS   LFT D+ VL+++  G
Sbjct: 111 ASSLSRHEYKAVKEITHFV--LKIGLLTGICLTAILGASFGSLATLFTQDIEVLQVVRTG 168

Query: 135 IPFVAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVA 194
           + FV+ +QP+NALA++FDG+++G SDF Y+A+SM+ V              +   G+W+ 
Sbjct: 169 VLFVSASQPLNALAYIFDGLHYGVSDFRYAAFSMMFVGAVSSAFLVFSPSHFGLRGVWLG 228

Query: 195 LTIYMSLRTSAG 206
           LT++M+LR  AG
Sbjct: 229 LTLFMALRVVAG 240


>IMGA|Medtr2g117440.2 Multi antimicrobial extrusion protein MatE
          chr02_pseudomolecule_IMGAG_V3 27587407-27586542 F
          EGN_Mt090430 20090702
          Length = 79

 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 50/57 (87%), Positives = 52/57 (91%)

Query: 17 PSGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQ 73
           +GFLL MRVIAVTFCVTLSASLAA  GST+MAAFQVCLQVWLA SLLADGLAVAGQ
Sbjct: 8  KNGFLLFMRVIAVTFCVTLSASLAAHHGSTSMAAFQVCLQVWLAVSLLADGLAVAGQ 64