Jatropha Genome Database

JcCB0533111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0533111.10 + phase: 0 /partial
         (106 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g110810.1 hypothetical protein chr07_pseudomolecule_I...    76   4e-15

>IMGA|Medtr7g110810.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 25862843-25869117 E
           EGN_Mt090430 20090702
          Length = 442

 Score = 75.9 bits (185), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 5   FITLSMQRKDGFELPSRLSVSAADCILAITEALTKKNKVSSNNPKLLNSDALHRPISLVP 64
           +I  ++Q  DGFELPSRL VSAADC L I+ ALTK  K+     K  N+ A  + I+ V 
Sbjct: 11  YIVATLQ--DGFELPSRLGVSAADCFLTISGALTKAAKLQDKKSK-FNTKAKDQAITYVQ 67

Query: 65  AVSREKKAKPAHKSSEESTFDMAYLLWDLIGELITLTQRLLA 106
           + + +KK K   KS   S F+  Y LW  + +LI L QRLL+
Sbjct: 68  SPTIDKKVKSDSKSLLMSKFERDYTLWHHLDDLIFLVQRLLS 109