Jatropha Genome Database

JcCB0528831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0528831.10 - phase: 1 /partial
         (229 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g106000.1 ; chr03_pseudomolecule_IMGAG_V3 26630653-26...   103   5e-23

>IMGA|Medtr3g106000.1 ; chr03_pseudomolecule_IMGAG_V3
           26630653-26626568 E EGN_Mt090430 20090702
          Length = 911

 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 95/161 (59%), Gaps = 12/161 (7%)

Query: 4   DSDNVCG-----FTNSLFSTGSGKSVNISSAGLVRAKTLLGLENNNVSNFQGFQHPRKSP 58
           DS +V G      TNSLF TGSG+ V ISS GLVRAKTLLGL  +  +     Q P+ + 
Sbjct: 243 DSGSVSGGKDAPLTNSLFKTGSGRKVTISSKGLVRAKTLLGLGLHEETVGANIQTPQNAE 302

Query: 59  KVNEQNEWQDLSYLRMKEDMDNSGMQS-VSTPSLIGSKLSNAVTPNLLQSELHNSTPKPP 117
           K++  +E  +L ++++   MD+  M S  S  S +  +L N      +Q +      K  
Sbjct: 303 KLHAFDE--ELPHVQL---MDSCKMMSSASFQSPLVGRLKNGFESKFVQPD-SGGGAKQA 356

Query: 118 PIKFHTAGGRSLSVSSDALERAKSLLGDPDLGTFLNEDDAV 158
           PIKF TA GRSLS+S DAL+RA+ LLGDPDLG F +  D++
Sbjct: 357 PIKFQTASGRSLSISGDALKRARRLLGDPDLGDFFDGGDSL 397



 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 7/127 (5%)

Query: 1   EKQDSDNVCGFTNSLFSTGSGKSVNISSAGLVRAKTLLGLENNNVSNFQGFQHPRKSPKV 60
           E+   D+  GF NSLF TGSG+ V ISS GLVRAKTLLGL  +  +     Q P+ + K 
Sbjct: 62  EENAIDDSFGFANSLFKTGSGRKVTISSKGLVRAKTLLGLGLHEETVGANIQTPQNAKKF 121

Query: 61  NEQNEWQDLSYLRMKEDMDNSGMQSVSTPSLIGSKLSNAVTPNLLQSELHNST---PKPP 117
           N  +  QD   L++ +    +   S  +P  + S+L N     ++Q +  + +    K  
Sbjct: 122 NSFH--QDEPRLQVIDSCKKTSAASFQSP--LVSRLKNGFENKIVQPDTGSRSGVGAKQA 177

Query: 118 PIKFHTA 124
           PIKF T 
Sbjct: 178 PIKFQTG 184