Jatropha Genome Database

JcCB0517161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0517161.20 + phase: 0 /partial
         (217 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g136090.1 Pentatricopeptide repeat chr03_pseudomolecu...   129   1e-30
IMGA|AC234703_7.1 pentatricopeptide, related AC234703.1 43858-47...    59   2e-09
IMGA|Medtr2g123230.1 Pentatricopeptide repeat chr02_pseudomolecu...    59   2e-09
IMGA|Medtr1g039940.1 Pentatricopeptide repeat chr01_pseudomolecu...    52   3e-07
IMGA|Medtr3g157290.1 Pentatricopeptide repeat chr03_pseudomolecu...    52   3e-07
IMGA|Medtr2g018090.1 Pentatricopeptide repeat chr02_pseudomolecu...    51   5e-07
IMGA|Medtr7g099950.1 Pentatricopeptide repeat chr07_pseudomolecu...    47   9e-06

>IMGA|Medtr3g136090.1 Pentatricopeptide repeat
           chr03_pseudomolecule_IMGAG_V3 34232179-34230857 H
           EGN_Mt090430 20090702
          Length = 440

 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/190 (38%), Positives = 110/190 (57%), Gaps = 20/190 (10%)

Query: 30  DSQLASATVTSSLL-TVDLISDVFRSIPRFFFQSTRSIGRQNTTRHRSPLKQRNLKQESC 88
           D    + +  S+L+ T D + ++ R I R+ FQS   IG QN     +P + R++   + 
Sbjct: 26  DIPFETTSPPSNLIWTPDAVIELLRFISRYSFQS---IGCQN-----NPFRHRSVPLSNF 77

Query: 89  KYRDKVLVLGPAAYRDHKRVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRL 148
           K+           + +    N+ L K+ EF +W+ +HF+F HT+ T REMA ++A+ +  
Sbjct: 78  KH----------PHTNPYLTNLSLRKSHEFLHWIHSHFNFLHTQSTTREMAILIAKSHNT 127

Query: 149 DKLWQFLKDMG-RRENGVGVKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDV 207
           + LW FLK    R        +VTT T+TCLIK+LGE+GL  +AL  FYRM+Q+ CKPDV
Sbjct: 128 NALWTFLKHFSIRLHTNDHNTIVTTPTVTCLIKLLGEQGLAKEALLTFYRMRQFGCKPDV 187

Query: 208 YAYNTIINAL 217
            AYN +INA+
Sbjct: 188 QAYNALINAM 197


>IMGA|AC234703_7.1 pentatricopeptide, related AC234703.1 43858-47785
           E EGN_Mt090430 20090702
          Length = 639

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 103 RDHKRVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRE 162
           R+  +++V ++  ++FF W     +F H   T   +   L     + +LW+ ++DM +  
Sbjct: 96  REVLKIDVEVHVKIQFFKWAGKKRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSP 155

Query: 163 NGVGVKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTII 214
             +G      + ++ ++K+LG   +VN+AL++FY++K   C+P    YN++I
Sbjct: 156 CAIG-----PSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVI 202


>IMGA|Medtr2g123230.1 Pentatricopeptide repeat
           chr02_pseudomolecule_IMGAG_V3 29786981-29790907 E
           EGN_Mt090430 20090702
          Length = 639

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 103 RDHKRVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRE 162
           R+  +++V ++  ++FF W     +F H   T   +   L     + +LW+ ++DM +  
Sbjct: 96  REVLKIDVEVHVKIQFFKWAGKKRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSP 155

Query: 163 NGVGVKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTII 214
             +G      + ++ ++K+LG   +VN+AL++FY++K   C+P    YN++I
Sbjct: 156 CAIG-----PSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVI 202


>IMGA|Medtr1g039940.1 Pentatricopeptide repeat
           chr01_pseudomolecule_IMGAG_V3 9280031-9277752 E
           EGN_Mt090430 20090702
          Length = 662

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 7/104 (6%)

Query: 115 AMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTNT 174
           ++E+F  L    +F HT +T   M   L R N +D +   L+ M + EN    + +    
Sbjct: 57  SLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQM-KLENVPCSQELFQFV 115

Query: 175 ITCLIKV-LGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
           I C  +  LGE+GL      +FYR++++ C+P V  YN +++AL
Sbjct: 116 IKCYRRSNLGEQGL-----KMFYRIREFGCEPSVKIYNLVLDAL 154


>IMGA|Medtr3g157290.1 Pentatricopeptide repeat
           chr03_pseudomolecule_IMGAG_V3 41441676-41443989 E
           EGN_Mt090430 20090702
          Length = 530

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 107 RVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVG 166
           R  +   +++ FF W  T   F  +     EM  +  +    D  W  +  M  R    G
Sbjct: 118 RHGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSR----G 173

Query: 167 VKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
           V+ +T +T + L++     GL  +A+  F RM+ Y CKPD  +++ +I++L
Sbjct: 174 VR-ITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSL 223


>IMGA|Medtr2g018090.1 Pentatricopeptide repeat
           chr02_pseudomolecule_IMGAG_V3 4671339-4672778 H
           EGN_Mt090430 20090702
          Length = 479

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 11/136 (8%)

Query: 83  LKQESCKYRDKVLVLGPAAYRDHKRVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVL 142
           +KQE C+  + V +      R + RV+  L+ A+  F+ +E  F    T+ +   +  +L
Sbjct: 76  MKQEDCEVTEDVFL---TICRGYGRVHRPLD-AIRVFHKME-DFQVKPTQKSYLTVFDIL 130

Query: 143 ARGNRLDKLWQFLKDMGRRENGVGVKLVTTNTITCLIKVLGE-EGLVNQALALFYRMKQY 201
              N + +   F K+M  RE G+   +V+ N    LIK L + E  V  A  LF  M   
Sbjct: 131 VEENHVKRAIGFYKEM--REKGIPPTVVSLNI---LIKALCKNEETVESAFRLFREMPNR 185

Query: 202 HCKPDVYAYNTIINAL 217
            C+PD Y Y T+IN L
Sbjct: 186 GCQPDSYTYGTLINGL 201


>IMGA|Medtr7g099950.1 Pentatricopeptide repeat
           chr07_pseudomolecule_IMGAG_V3 22422668-22424425 E
           EGN_Mt090430 20090702
          Length = 585

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 107 RVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVG 166
           RV      A  FF W      + H+      M  VL +  R D  W  +++M  R    G
Sbjct: 140 RVRNDWEAAFTFFLWAGKQPGYDHSVREYHSMISVLGKMRRFDTAWALVEEM--RRGKTG 197

Query: 167 VKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
             +VT  T+  +I+       V +A+  FY  K+++ +  +Y +  +++AL
Sbjct: 198 ESIVTPQTLLIMIRKYCAVHDVGRAINTFYAFKRFNFQVGLYEFQGLLSAL 248