Jatropha Genome Database

JcCB0517161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0517161.10 + phase: 1 /TE/partial
         (128 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g036540.1 Zinc finger, CCHC-type chr06_pseudomolecule...    54   2e-08

>IMGA|Medtr6g036540.1 Zinc finger, CCHC-type
           chr06_pseudomolecule_IMGAG_V3 8117470-8116658 H
           EGN_Mt090430 20090702
          Length = 270

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 37  DMSRIQCYSCKNYGHIAANCGKKFCNYCKQSGHVIKECPTRPQNRKANAAPIAPNNL 93
           D   ++C++CK  GHIA+NC    C YCK  GH+I+ CPTRP     N     P++L
Sbjct: 197 DCPNVECHNCKKKGHIASNC----CRYCKTPGHLIQNCPTRPPQHDQNKNQQRPSSL 249