Jatropha Genome Database

JcCB0510081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0510081.10 - phase: 0 
         (118 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g117520.1 Ribosomal L18ae protein chr02_pseudomolecul...   221   5e-59
IMGA|Medtr5g098360.1 Ribosomal L18ae protein chr05_pseudomolecul...   221   5e-59
IMGA|Medtr5g098330.1 Ribosomal L18ae protein chr05_pseudomolecul...   221   5e-59
IMGA|Medtr5g098330.2 Ribosomal L18ae protein chr05_pseudomolecul...   221   8e-59
IMGA|Medtr2g024910.1 Ribosomal L18ae protein chr02_pseudomolecul...   113   3e-26

>IMGA|Medtr2g117520.1 Ribosomal L18ae protein
           chr02_pseudomolecule_IMGAG_V3 27635062-27636702 E
           EGN_Mt090430 20090702
          Length = 178

 Score =  221 bits (564), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 103/115 (89%), Positives = 108/115 (93%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVRFPCI
Sbjct: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCI 123

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT TIPA LCKRES+KQFHNSKIKFPLV+KK+RPPTR L+TTYKA +PNLFM
Sbjct: 124 QIIKTATIPANLCKRESTKQFHNSKIKFPLVYKKIRPPTRSLKTTYKAKKPNLFM 178


>IMGA|Medtr5g098360.1 Ribosomal L18ae protein
           chr05_pseudomolecule_IMGAG_V3 39212270-39214469 E
           EGN_Mt090430 20090702
          Length = 178

 Score =  221 bits (564), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 103/115 (89%), Positives = 108/115 (93%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVRFPCI
Sbjct: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCI 123

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT TIPA LCKRES+KQFHNSKIKFPLV+KK+RPPTR L+TTYKA +PNLFM
Sbjct: 124 QIIKTATIPANLCKRESTKQFHNSKIKFPLVYKKIRPPTRSLKTTYKAKKPNLFM 178


>IMGA|Medtr5g098330.1 Ribosomal L18ae protein
           chr05_pseudomolecule_IMGAG_V3 39203439-39205830 F
           EGN_Mt090430 20090702
          Length = 178

 Score =  221 bits (564), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 103/115 (89%), Positives = 108/115 (93%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVRFPCI
Sbjct: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCI 123

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT TIPA LCKRES+KQFHNSKIKFPLV+KK+RPPTR L+TTYKA +PNLFM
Sbjct: 124 QIIKTATIPANLCKRESTKQFHNSKIKFPLVYKKIRPPTRSLKTTYKAKKPNLFM 178


>IMGA|Medtr5g098330.2 Ribosomal L18ae protein
           chr05_pseudomolecule_IMGAG_V3 39203439-39205832 F
           EGN_Mt090430 20090702
          Length = 147

 Score =  221 bits (562), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 103/115 (89%), Positives = 108/115 (93%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVRFPCI
Sbjct: 33  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCI 92

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT TIPA LCKRES+KQFHNSKIKFPLV+KK+RPPTR L+TTYKA +PNLFM
Sbjct: 93  QIIKTATIPANLCKRESTKQFHNSKIKFPLVYKKIRPPTRSLKTTYKAKKPNLFM 147


>IMGA|Medtr2g024910.1 Ribosomal L18ae protein
           chr02_pseudomolecule_IMGAG_V3 6469963-6470978 E
           EGN_Mt090430 20090702
          Length = 126

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 63/85 (74%)

Query: 32  MYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTGTIPAKLCKRESSKQFHNSKIKF 91
           MYKE+RDTTLNGAV+ MY E ASRHRV FPCIQIIKT TIPAKLCKRES+KQFH+SK + 
Sbjct: 1   MYKEFRDTTLNGAVDLMYNETASRHRVCFPCIQIIKTATIPAKLCKRESTKQFHDSKDQV 60

Query: 92  PLVFKKVRPPTRKLRTTYKASRPNL 116
           P+ F++    T++     +     L
Sbjct: 61  PIGFQENHTTTQEAEDNIQGQEAEL 85