Jatropha Genome Database

JcCB0508071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0508071.10 + phase: 0 /partial
         (136 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g026820.1 C2 calcium/lipid-binding region, CaLB; chr0...    64   3e-11
IMGA|Medtr1g016730.1 Actin-binding FH2; C2 calcium/lipid-binding...    46   6e-06

>IMGA|Medtr5g026820.1 C2 calcium/lipid-binding region, CaLB;
           chr05_pseudomolecule_IMGAG_V3 10860241-10855241 E
           EGN_Mt090430 20090702
          Length = 975

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/34 (82%), Positives = 31/34 (91%)

Query: 61  APRKTSLKPLHWVKVTRAVQGSLWADSQKQENLS 94
           A +KT LKPLHWVKV+RAVQGSLWADSQKQ+N S
Sbjct: 835 AVKKTLLKPLHWVKVSRAVQGSLWADSQKQDNSS 868


>IMGA|Medtr1g016730.1 Actin-binding FH2; C2 calcium/lipid-binding
            region, CaLB; chr01_pseudomolecule_IMGAG_V3
            3303853-3295156 H EGN_Mt090430 20090702
          Length = 1641

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 27/32 (84%)

Query: 63   RKTSLKPLHWVKVTRAVQGSLWADSQKQENLS 94
            ++++LKP HW+K+TRA+ GSLWA++QK +  S
Sbjct: 1292 KRSNLKPYHWLKLTRAMHGSLWAETQKLDEAS 1323