Jatropha Genome Database

JcCB0506361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0506361.10 + phase: 0 /pseudo/partial
         (235 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g100560.1 N-glycosylase/DNA lyase, related chr03_pseu...   202   1e-52
IMGA|Medtr4g144890.1 HhH-GPD; 8-oxoguanine DNA-glycosylase chr04...   201   4e-52

>IMGA|Medtr3g100560.1 N-glycosylase/DNA lyase, related
           chr03_pseudomolecule_IMGAG_V3 24115405-24112945 E
           EGN_Mt090430 20090702
          Length = 420

 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/139 (68%), Positives = 113/139 (81%)

Query: 6   RAKYITGTVDALQSKPGGGAEWLSSLRKSDLQVVVDALCTLPGVGPKVASCIALFSLDQH 65
           RAKYITGTV+ LQSKP GG EWL SLRK +L+ V+  L  LPGVGPKVA+CIAL+SLDQH
Sbjct: 215 RAKYITGTVNVLQSKPEGGEEWLYSLRKLELEDVISELIKLPGVGPKVAACIALYSLDQH 274

Query: 66  HAIPVDTHVWQIATRYLLPELAAVRLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPS 125
           HAIPVD H+W+IA +Y+LPELA  +LT KL SRVA+AFV+K+GKYAGWAQ +LFIAELPS
Sbjct: 275 HAIPVDVHIWRIAQKYILPELAGSKLTQKLHSRVAEAFVTKFGKYAGWAQAVLFIAELPS 334

Query: 126 QKTLLPSHFWTINEKKSAT 144
           QK +LPSH     ++  A 
Sbjct: 335 QKAILPSHLRATKQQSPAN 353


>IMGA|Medtr4g144890.1 HhH-GPD; 8-oxoguanine DNA-glycosylase
           chr04_pseudomolecule_IMGAG_V3 36590678-36596814 H
           EGN_Mt090430 20090702
          Length = 420

 Score =  201 bits (510), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 113/138 (81%)

Query: 6   RAKYITGTVDALQSKPGGGAEWLSSLRKSDLQVVVDALCTLPGVGPKVASCIALFSLDQH 65
           RAKYITGTV+ LQSKP GG EWL SLRK +L+ V+  L  LPGVGPKVA+CIAL+SLDQH
Sbjct: 215 RAKYITGTVNVLQSKPEGGEEWLYSLRKLELEDVISELIKLPGVGPKVAACIALYSLDQH 274

Query: 66  HAIPVDTHVWQIATRYLLPELAAVRLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPS 125
           HAIPVD H+W+IA +Y+LPELA  +LT KL SRVA+AFV+K+GKYAGWAQ +LFIAELPS
Sbjct: 275 HAIPVDVHIWRIAQKYILPELAGSKLTQKLHSRVAEAFVTKFGKYAGWAQAVLFIAELPS 334

Query: 126 QKTLLPSHFWTINEKKSA 143
           QK +LPSH     ++  A
Sbjct: 335 QKAILPSHLRATKQQSPA 352