Jatropha Genome Database

JcCB0504061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0504061.20 + phase: 1 /pseudo/partial
         (72 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g042850.1 Malate dehydrogenase, active site chr01_pse...    58   1e-09
IMGA|Medtr8g005780.1 Malate dehydrogenase, active site chr08_pse...    54   2e-08
IMGA|Medtr7g037760.1 Lactate/malate dehydrogenase chr07_pseudomo...    50   3e-07

>IMGA|Medtr1g042850.1 Malate dehydrogenase, active site
          chr01_pseudomolecule_IMGAG_V3 9957754-9962850 E
          EGN_Mt090430 20090702
          Length = 332

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG+MLG DQPVILHMLDI  AA++L GVK
Sbjct: 23 PMIARGVMLGPDQPVILHMLDIAPAAESLNGVK 55


>IMGA|Medtr8g005780.1 Malate dehydrogenase, active site
          chr08_pseudomolecule_IMGAG_V3 440550-443912 E
          EGN_Mt090430 20090702
          Length = 354

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/31 (74%), Positives = 28/31 (90%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEG 52
          PM+ARG+MLG +QPVILHMLDIE A +AL+G
Sbjct: 59 PMIARGMMLGPNQPVILHMLDIEPALEALKG 89


>IMGA|Medtr7g037760.1 Lactate/malate dehydrogenase
          chr07_pseudomolecule_IMGAG_V3 9114057-9113560 H
          EGN_Mt090430 20090702
          Length = 165

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 28/34 (82%)

Query: 21 CPMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
           PM+ARG+MLG +Q VILHMLDIE   +AL+GVK
Sbjct: 31 APMIARGMMLGTNQHVILHMLDIEPTLEALKGVK 64