Jatropha Genome Database

JcCB0504061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0504061.10 + phase: 1 /partial
         (83 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g005780.1 Malate dehydrogenase, active site chr08_pse...   152   3e-38
IMGA|Medtr1g042850.1 Malate dehydrogenase, active site chr01_pse...   139   3e-34
IMGA|AC235664_2.3 Malate dehydrogenase, active site AC235664.1 6...    52   7e-08

>IMGA|Medtr8g005780.1 Malate dehydrogenase, active site
           chr08_pseudomolecule_IMGAG_V3 440550-443912 E
           EGN_Mt090430 20090702
          Length = 354

 Score =  152 bits (385), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 73/80 (91%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHI DWV GTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTC+KG W+IVQGLKIDEFSR 
Sbjct: 275 CDHIHDWVLGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCDKGEWNIVQGLKIDEFSRE 334

Query: 63  KMDATAKELTEEKSLAYSCL 82
           KMD TA+EL EEK+LA SCL
Sbjct: 335 KMDKTAQELIEEKALANSCL 354


>IMGA|Medtr1g042850.1 Malate dehydrogenase, active site
           chr01_pseudomolecule_IMGAG_V3 9957754-9962850 E
           EGN_Mt090430 20090702
          Length = 332

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 70/81 (86%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTP+GT+VSMGVYSDGSY +  GLIYSFPVTC  G W IVQGL IDEFSR 
Sbjct: 252 CDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIVQGLSIDEFSRK 311

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           K+D TA+EL+EEK+LAYSCL+
Sbjct: 312 KLDLTAEELSEEKNLAYSCLS 332


>IMGA|AC235664_2.3 Malate dehydrogenase, active site AC235664.1
           6223-3733 E EGN_Mt090430 20090702
          Length = 295

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 4   DHIRDWVPGTPKGTWVSMGVYSDGS-YGIQPGLIYSFPVTCE---KGNWSIVQGLKIDEF 59
           D IR  +  TP+G W S GVY+ G+ YGI   +++S P   +    G++ +V+ +  D++
Sbjct: 194 DAIRSLITPTPEGDWFSTGVYTSGNPYGIAEDIVFSMPCRSKASGDGDYELVKDVIFDDY 253

Query: 60  SRAKMDATAKELTEEK 75
            R K+  T  EL  EK
Sbjct: 254 LRQKLAKTEAELLAEK 269