Jatropha Genome Database

JcCB0499871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0499871.10 - phase: 0 
         (277 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g112550.1 Helix-loop-helix DNA-binding chr08_pseudomo...    62   2e-10
IMGA|Medtr8g112210.1 Helix-loop-helix DNA-binding chr08_pseudomo...    55   3e-08
IMGA|Medtr4g111220.2 Helix-loop-helix DNA-binding chr04_pseudomo...    55   4e-08
IMGA|Medtr2g096770.1 Helix-loop-helix DNA-binding chr02_pseudomo...    55   4e-08
IMGA|Medtr4g111220.1 Helix-loop-helix DNA-binding chr04_pseudomo...    55   5e-08
IMGA|Medtr1g042530.1 Helix-loop-helix DNA-binding chr01_pseudomo...    52   5e-07
IMGA|Medtr2g103480.1 Peptidase S10, serine carboxypeptidase; Hel...    47   9e-06

>IMGA|Medtr8g112550.1 Helix-loop-helix DNA-binding
           chr08_pseudomolecule_IMGAG_V3 25287699-25285553 F
           EGN_Mt090430 20090702
          Length = 224

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 47/74 (63%)

Query: 26  PKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKSDIEN 85
           P N KA+IL +  +LLKDL  Q+  LK E  +L  ES  +T EKN+L+EE +SL++ IE 
Sbjct: 60  PNNGKASILIEASRLLKDLLCQIQSLKKENVSLLSESHYVTMEKNELKEENSSLETQIEK 119

Query: 86  LNIQYQQRLRSTYP 99
           L  + Q R+  + P
Sbjct: 120 LQGEIQARIAQSKP 133


>IMGA|Medtr8g112210.1 Helix-loop-helix DNA-binding
           chr08_pseudomolecule_IMGAG_V3 25123592-25121789 F
           EGN_Mt090430 20090702
          Length = 150

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query: 22  DPDRPKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKS 81
           D   P N KA+IL +  +LLKDL  Q+  LK E  +L  ES  +T EKN+L+EE +SL++
Sbjct: 56  DLSEPNNGKASILIEASRLLKDLLCQIQSLKKENVSLLSESHYVTMEKNELKEENSSLET 115

Query: 82  DIE 84
            IE
Sbjct: 116 QIE 118


>IMGA|Medtr4g111220.2 Helix-loop-helix DNA-binding
           chr04_pseudomolecule_IMGAG_V3 25379957-25377285 E
           EGN_Mt090430 20090702
          Length = 193

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 22  DPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P RP K DKA IL D ++++  L  +  KLK   + L E+ +EL  EKN+LR+EK  LK
Sbjct: 60  EPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLK 119

Query: 81  SDIENLNIQYQ 91
           ++ E L  Q +
Sbjct: 120 AEKEKLEQQLK 130


>IMGA|Medtr2g096770.1 Helix-loop-helix DNA-binding
           chr02_pseudomolecule_IMGAG_V3 22457718-22460247 E
           EGN_Mt090430 20090702
          Length = 230

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 22  DPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P RP K DKA IL D ++++  L  +  KLK   + L E+ +EL  EKN+LR+EK  LK
Sbjct: 97  EPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLK 156

Query: 81  SDIENLNIQYQ 91
           ++ E L  Q +
Sbjct: 157 AEKEKLEQQVK 167


>IMGA|Medtr4g111220.1 Helix-loop-helix DNA-binding
           chr04_pseudomolecule_IMGAG_V3 25380817-25377285 E
           EGN_Mt090430 20090702
          Length = 237

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 22  DPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P RP K DKA IL D ++++  L  +  KLK   + L E+ +EL  EKN+LR+EK  LK
Sbjct: 104 EPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLK 163

Query: 81  SDIENLNIQYQ 91
           ++ E L  Q +
Sbjct: 164 AEKEKLEQQLK 174


>IMGA|Medtr1g042530.1 Helix-loop-helix DNA-binding
           chr01_pseudomolecule_IMGAG_V3 9772115-9767989 E
           EGN_Mt090430 20090702
          Length = 248

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 14  ICKVRFDSDPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDL 72
            C +    +P RP + DK  IL D I++L  L ++  +LK     L EE + L  EKN+L
Sbjct: 112 FCDLSAVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKESNEKLLEEIKCLKAEKNEL 171

Query: 73  REEKASLKSDIENLNIQYQ 91
           REEK  LK+D E +  Q +
Sbjct: 172 REEKLVLKADKEKIEKQLK 190


>IMGA|Medtr2g103480.1 Peptidase S10, serine carboxypeptidase;
           Helix-loop-helix DNA-binding
           chr02_pseudomolecule_IMGAG_V3 24124594-24127471 E
           EGN_Mt090430 20090702
          Length = 260

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 22  DPDR-PKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +PD  PK DK ++L D ++++  L ++  +LK     L E+ +EL  EK +LR+EK  LK
Sbjct: 133 EPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKKELRDEKNKLK 192

Query: 81  SDIENLNIQ 89
            D E L  Q
Sbjct: 193 LDKEKLEQQ 201