Jatropha Genome Database

JcCB0498951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0498951.10 + phase: 0 /pseudo/partial
         (236 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g025270.1 Carotenoid oxygenase chr05_pseudomolecule_I...    53   1e-07
IMGA|Medtr5g025290.1 Carotenoid oxygenase chr05_pseudomolecule_I...    53   1e-07
IMGA|Medtr5g025250.1 Carotenoid oxygenase chr05_pseudomolecule_I...    52   3e-07

>IMGA|Medtr5g025270.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10102084-10100345 E
           EGN_Mt090430 20090702
          Length = 579

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 38  QPLHYLNGNFAPV-PEAPPVKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
            P H L+ NFAPV  E PP +   + G LP  LNG ++R GPNP+F P   YH + G+
Sbjct: 97  DPRHVLSQNFAPVLDELPPTQCKVIKGTLPPSLNGVYIRNGPNPQFLPRGPYHLFDGD 154


>IMGA|Medtr5g025290.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10116366-10118405 E
           EGN_Mt090430 20090702
          Length = 581

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 38  QPLHYLNGNFAPV-PEAPPVKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
            P H L+ NFAPV  E PP +   + G LP  LNG ++R GPNP+F P   YH + G+
Sbjct: 98  DPRHVLSQNFAPVLDELPPTQCKVIKGTLPPSLNGVYIRNGPNPQFLPRGPYHLFDGD 155


>IMGA|Medtr5g025250.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10093326-10091325 E
           EGN_Mt090430 20090702
          Length = 578

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 38  QPLHYLNGNFAPV-PEAPPVKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
            P H L+ NFAPV  E PP + + + G LP  L G ++R GPNP+F P   YH + G+
Sbjct: 96  DPRHVLSQNFAPVLDELPPTQCVIIKGTLPPSLYGAYIRNGPNPQFLPRGPYHLFDGD 153