Jatropha Genome Database

JcCB0492781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492781.10 - phase: 0 /partial
         (200 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g090150.1 Peptidase M20 chr04_pseudomolecule_IMGAG_V3...   310   2e-85
IMGA|Medtr4g090150.2 Peptidase M20 chr04_pseudomolecule_IMGAG_V3...   198   1e-51
IMGA|Medtr1g089890.1 Peptidase M20 chr01_pseudomolecule_IMGAG_V3...    74   6e-14

>IMGA|Medtr4g090150.1 Peptidase M20 chr04_pseudomolecule_IMGAG_V3
           18969309-18964409 E EGN_Mt090430 20090702
          Length = 563

 Score =  310 bits (795), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/197 (77%), Positives = 177/197 (89%), Gaps = 5/197 (2%)

Query: 1   MQVMVKGSQGHAGTVPMSLRQDPMAAAAELIVLLESLCKHPKDFLSYDGYCNDSIVESLS 60
           ++V V+GSQGHAGTVPMS+RQDPM AAAE IVL+ESLCKHP+++LSYDG C+ S ++SLS
Sbjct: 351 LKVTVRGSQGHAGTVPMSMRQDPMVAAAEQIVLMESLCKHPEEYLSYDGRCSGSSIKSLS 410

Query: 61  SSLVCTVGEISTWPSASNVIPGQVTFTVDLRAMDDMGREAVLYELSNQIYHICDRRSVSC 120
           SSLVCTVGEISTWPSASNV     T+TVD+RA+DD+GREAV+Y+LSN+IY ICD+RSVSC
Sbjct: 411 SSLVCTVGEISTWPSASNV-----TYTVDIRAIDDLGREAVIYDLSNRIYQICDKRSVSC 465

Query: 121 IIERKHDAKAVICDSELSLQLKSAANAALKRMTGEIQDEVPVLMSGAGHDAMAMSHLTKV 180
           +IE KHDA AVICD ELS QLKSAA +ALKRM G+IQDEVP LMSGAGHDAMAMSHLTKV
Sbjct: 466 VIEHKHDAGAVICDPELSSQLKSAAYSALKRMEGDIQDEVPTLMSGAGHDAMAMSHLTKV 525

Query: 181 GMLFVRCRGGVSHSPAD 197
           GMLFVRCRGG+SHSP +
Sbjct: 526 GMLFVRCRGGISHSPQE 542


>IMGA|Medtr4g090150.2 Peptidase M20 chr04_pseudomolecule_IMGAG_V3
           18967311-18964409 E EGN_Mt090430 20090702
          Length = 219

 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 105/114 (92%)

Query: 84  VTFTVDLRAMDDMGREAVLYELSNQIYHICDRRSVSCIIERKHDAKAVICDSELSLQLKS 143
           VT+TVD+RA+DD+GREAV+Y+LSN+IY ICD+RSVSC+IE KHDA AVICD ELS QLKS
Sbjct: 85  VTYTVDIRAIDDLGREAVIYDLSNRIYQICDKRSVSCVIEHKHDAGAVICDPELSSQLKS 144

Query: 144 AANAALKRMTGEIQDEVPVLMSGAGHDAMAMSHLTKVGMLFVRCRGGVSHSPAD 197
           AA +ALKRM G+IQDEVP LMSGAGHDAMAMSHLTKVGMLFVRCRGG+SHSP +
Sbjct: 145 AAYSALKRMEGDIQDEVPTLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPQE 198


>IMGA|Medtr1g089890.1 Peptidase M20 chr01_pseudomolecule_IMGAG_V3
           18046686-18042200 F EGN_Mt090430 20090702
          Length = 469

 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 24/199 (12%)

Query: 1   MQVMVKGSQGHAGTVPMSLRQDPMAAAAELIVLLESLCKHPKDFLSYDGYCNDSIVESLS 60
           ++V  +G+ GHAG V M  R D   AA+EL + +E   KH              ++ES S
Sbjct: 273 LRVEFEGNGGHAGAVLMPNRNDAGLAASELALAVE---KH--------------VLESGS 315

Query: 61  SSLVCTVGEISTWPSASNVIPGQVTFTVDLRAMDDMGREAVLYELSNQIYHICDRRSVSC 120
              V TVG +   P A N IP +    +D R +D+  R  V+ ++      I   R V  
Sbjct: 316 VDTVGTVGILQLHPGAINSIPSKSHIEIDTRDIDEERRNQVIEKIHETAIRITKTRGV-- 373

Query: 121 IIERKHDAKAVICDSELSLQLKSAANAALKRMTGEIQDEVPVLMSGAGHDAMAMSHLTKV 180
               K     +I     +L  ++  NA ++  T E+     +++S A HD++ M+ ++ +
Sbjct: 374 ----KLTEFHIINQDPPALSDEAVVNA-METATKELNLTSKLMISRAYHDSLFMARVSPM 428

Query: 181 GMLFVRCRGGVSHSPADMC 199
           GM+F+ C  G SH P +  
Sbjct: 429 GMIFIPCYKGYSHKPEEFA 447