Jatropha Genome Database

JcCB0492761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492761.10 + phase: 0 
         (322 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g140600.1 Ribose/galactose isomerase; Cupin region ch...   438   e-123
IMGA|Medtr4g149440.1 Ribose/galactose isomerase chr04_pseudomole...   217   5e-57
IMGA|Medtr7g140580.1 Ribose/galactose isomerase chr07_pseudomole...   192   2e-49

>IMGA|Medtr7g140600.1 Ribose/galactose isomerase; Cupin region
           chr07_pseudomolecule_IMGAG_V3 33895494-33891835 E
           EGN_Mt090430 20090702
          Length = 306

 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/302 (70%), Positives = 246/302 (81%), Gaps = 8/302 (2%)

Query: 12  RPLKVITGADAYGCTLKDALVSHLRSLNIDVEDLGTSSYYSIAAEVGRRVSAANXXXXXX 71
           + +K+I GAD +G  LKDAL+SHLRSLNI VEDLGTSSYYS  A VGRRVS +       
Sbjct: 6   KHIKIIAGADDFGTPLKDALLSHLRSLNIQVEDLGTSSYYSAGAVVGRRVSQSISSSSQ- 64

Query: 72  XXXEIRGLVACGTGVGVSIFANKFPGVFANTCLSTADAINTRSINNCNVLAVSGLATTPE 131
              E+RGLVACGTG GVSIFANKFPGVFA TCL+ +DA+N RSINN NVLAVSG  T+PE
Sbjct: 65  ---EVRGLVACGTGAGVSIFANKFPGVFAATCLTPSDAVNARSINNSNVLAVSGKYTSPE 121

Query: 132 SGIEILDAWLNTPFKAPCPAFGSTPYNEEISSFLDNSLVEMPKIGQEDKKEETSTLNPCA 191
           + IEI+  WLNTPFK+PCPA  + P+ +EI +FLD SLVEMP+IG    K E   ++ CA
Sbjct: 122 TAIEIVKTWLNTPFKSPCPANDNKPWPQEIENFLDKSLVEMPEIG----KSEPEPVDSCA 177

Query: 192 LCCLVKNRKLDPIDIIPGGSMKIVRESPTSAFVSFKAGSVEPAHHHTFGHDLVVIKGSKR 251
           +CCLVKNR+L+PID+IPGGSMKI+RE+PTSAFV FKAGSVEPAHHHTFGHDLVVI+G K 
Sbjct: 178 VCCLVKNRELNPIDLIPGGSMKIIRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKS 237

Query: 252 VWNLSKKTKYDLVVGDYLFTPAGDVHRVKYFEDTEFFIKWEGQWDIFFDEDLEVAKSAIE 311
           VWNL+K+ +YDL VGDYLFTPAGDVHRVKY EDTEFFIKW+  WD+FFDEDLE  K AI+
Sbjct: 238 VWNLTKEERYDLTVGDYLFTPAGDVHRVKYHEDTEFFIKWDSHWDMFFDEDLETGKIAID 297

Query: 312 KE 313
           KE
Sbjct: 298 KE 299


>IMGA|Medtr4g149440.1 Ribose/galactose isomerase
           chr04_pseudomolecule_IMGAG_V3 37157117-37157973 E
           EGN_Mt090430 20090702
          Length = 188

 Score =  217 bits (553), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/168 (65%), Positives = 130/168 (77%), Gaps = 6/168 (3%)

Query: 14  LKVITGA--DAYGCTLKDALVSHLRSLNIDVEDLGTSSYYSIAAEVGRRVSAANXXXXXX 71
           +K+ITG+  D Y  +LKD LVS+LRS+NI VEDLGTSSYYS AAEVGRRVS +       
Sbjct: 8   IKIITGSGTDHYSISLKDTLVSYLRSINIQVEDLGTSSYYSAAAEVGRRVSQS----TPS 63

Query: 72  XXXEIRGLVACGTGVGVSIFANKFPGVFANTCLSTADAINTRSINNCNVLAVSGLATTPE 131
              E+RGLVACGTG GVSIFANKFPGVFA TCL+ ADA+N RSINN NVLAVSG  T+ E
Sbjct: 64  SSPEVRGLVACGTGAGVSIFANKFPGVFAVTCLTPADAVNARSINNSNVLAVSGKYTSAE 123

Query: 132 SGIEILDAWLNTPFKAPCPAFGSTPYNEEISSFLDNSLVEMPKIGQED 179
           + +EI+DAWLNTPF +PCPA  + P+ EE+  FLD SLVEM +IG+ D
Sbjct: 124 TAVEIVDAWLNTPFNSPCPASNNKPWPEEMERFLDKSLVEMAEIGKGD 171


>IMGA|Medtr7g140580.1 Ribose/galactose isomerase
           chr07_pseudomolecule_IMGAG_V3 33889744-33889133 E
           EGN_Mt090430 20090702
          Length = 203

 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 127/166 (76%), Gaps = 5/166 (3%)

Query: 14  LKVITGADAYGCTLKDALVSHLRSLNIDVEDLGT-SSYYSIAAEVGRRVSAANXXXXXXX 72
           +K+I GAD +G  +  AL++HLRSLNI+ E LGT SSYY+  AEVGR VS +        
Sbjct: 8   IKIIVGADKFGSPIIPALLTHLRSLNIEFEYLGTFSSYYAAGAEVGRIVSQS----SSSS 63

Query: 73  XXEIRGLVACGTGVGVSIFANKFPGVFANTCLSTADAINTRSINNCNVLAVSGLATTPES 132
             EI GLVACGTG+GV+IFANKFPGV+A+TCL   +A+NTRSINN NVLA+SG  T+PE 
Sbjct: 64  SPEIIGLVACGTGIGVAIFANKFPGVYASTCLHPWEAVNTRSINNSNVLALSGKFTSPEI 123

Query: 133 GIEILDAWLNTPFKAPCPAFGSTPYNEEISSFLDNSLVEMPKIGQE 178
           GIEI++AWLNTPFK+PC A  + P+ +E+ + LD SLV+MPKIG++
Sbjct: 124 GIEIVNAWLNTPFKSPCLASDNKPWPQEVENLLDRSLVDMPKIGKK 169