Jatropha Genome Database

JcCB0489751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0489751.10 + phase: 2 /partial
         (261 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g145580.1 Actin-binding FH2; C2 calcium/lipid-binding...   112   1e-25
IMGA|Medtr1g016730.1 Actin-binding FH2; C2 calcium/lipid-binding...    90   1e-18
IMGA|Medtr5g026820.1 C2 calcium/lipid-binding region, CaLB; chr0...    75   3e-14

>IMGA|Medtr8g145580.1 Actin-binding FH2; C2 calcium/lipid-binding
           region, CaLB; chr08_pseudomolecule_IMGAG_V3
           35409574-35425027 E EGN_Mt090430 20090702
          Length = 1180

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 71/88 (80%), Gaps = 2/88 (2%)

Query: 175 KGR-LSRTISSRSNQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELENLF 233
           KGR L R I S+ N +KKLKPLHW+KL+RAVQGSLW E QKSGEASKAPEID+SELE+LF
Sbjct: 776 KGRVLPRAIGSK-NDSKKLKPLHWMKLSRAVQGSLWDETQKSGEASKAPEIDMSELESLF 834

Query: 234 SASVPNSDHGRKSRIHSSRGRKAEKVQL 261
           SA+ P+S   +KS + SS   K+EKVQL
Sbjct: 835 SAAAPSSGPAKKSNVQSSVKPKSEKVQL 862


>IMGA|Medtr1g016730.1 Actin-binding FH2; C2 calcium/lipid-binding
            region, CaLB; chr01_pseudomolecule_IMGAG_V3
            3303853-3295156 H EGN_Mt090430 20090702
          Length = 1641

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 62/90 (68%), Gaps = 4/90 (4%)

Query: 175  KGR-LSRTISSRSNQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELENLF 233
            KGR L RT +    +   LKP HWLKLTRA+ GSLWAE QK  EAS+APE D+SELE LF
Sbjct: 1278 KGRGLLRTNAKTQTKRSNLKPYHWLKLTRAMHGSLWAETQKLDEASRAPEFDMSELETLF 1337

Query: 234  SASVPNSDH--GRKSRIHSSRGRKAEKVQL 261
            SA+ P+S H  G KS    S G+K +KVQL
Sbjct: 1338 SANNPSSSHEKGGKSNRRGS-GQKPDKVQL 1366


>IMGA|Medtr5g026820.1 C2 calcium/lipid-binding region, CaLB;
           chr05_pseudomolecule_IMGAG_V3 10860241-10855241 E
           EGN_Mt090430 20090702
          Length = 975

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 5/73 (6%)

Query: 192 LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELENLFSASVPNSDHGRKSRIHSS 251
           LKPLHW+K++RAVQGSLWA++QK   +S+AP+ID+SELE LFSA+  +  +  K  +   
Sbjct: 841 LKPLHWVKVSRAVQGSLWADSQKQDNSSRAPDIDISELETLFSAASISDGNSTKGGVR-- 898

Query: 252 RG---RKAEKVQL 261
           RG    K EKVQL
Sbjct: 899 RGPNINKPEKVQL 911