Jatropha Genome Database

JcCB0488391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0488391.10 - phase: 0 /partial
         (111 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g015940.1 Ribosomal protein L29; Alpha-helical ferred...   138   8e-34

>IMGA|Medtr5g015940.1 Ribosomal protein L29; Alpha-helical
           ferredoxin; Mitochondrial 39-S ribosomal L47
           chr05_pseudomolecule_IMGAG_V3 5435034-5430035 E
           EGN_Mt090430 20090702
          Length = 243

 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 76/111 (68%), Gaps = 3/111 (2%)

Query: 1   MFMTRFIGRTLFXXXXXXXXXXXXXTIQFARNPLEEFFEADRSQDEDNKIFYGRSWKASE 60
           MF+ R   +T F             T    RNPL EFFEADR  D +  + YGRSWKASE
Sbjct: 107 MFLARAFRQTFFAAAAARSKHYST-TAGAVRNPLPEFFEADR--DNETPVVYGRSWKASE 163

Query: 61  LRLKSWDDLQKLWYVMLKEKNMLMTQRQMLHAQNLRFPNPERLPKVELSFS 111
           LRLKSWDDL KLWYV+LKEKNMLMTQRQML AQNLRFPNPERLPKV  S  
Sbjct: 164 LRLKSWDDLHKLWYVLLKEKNMLMTQRQMLQAQNLRFPNPERLPKVRKSMC 214