Jatropha Genome Database

JcCB0487491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0487491.10 + phase: 0 
         (202 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233656_29.1 Mannose-6-phosphate isomerase, type I AC23365...    99   2e-21

>IMGA|AC233656_29.1 Mannose-6-phosphate isomerase, type I AC233656.1
           117027-112130 E EGN_Mt090430 20090702
          Length = 333

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/57 (80%), Positives = 51/57 (89%)

Query: 133 KVLSVEKALSIQAHPDKELARALHISQPNVYKDGNHKPEMALALTEFEALCGFISTK 189
           +VLSV KALSIQAHPDKELAR LH   P+VYKDGNHKPEMALA+T+FEALCGFI+ K
Sbjct: 13  QVLSVGKALSIQAHPDKELARMLHKLHPDVYKDGNHKPEMALAMTDFEALCGFITLK 69