Jatropha Genome Database

JcCB0487041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0487041.10 - phase: 0 /pseudo
         (128 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g160520.1 hypothetical protein chr04_pseudomolecule_I...    99   5e-22

>IMGA|Medtr4g160520.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 40701538-40697885 F
           EGN_Mt090430 20090702
          Length = 194

 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 65/103 (63%), Gaps = 3/103 (2%)

Query: 1   MKKLARNWRKSHEEKXXXXXXXXXXXXXXXXXXXEEQEELVRSLERTQAEQSLFWRRVFA 60
           MKKLAR +R++ E+                    +EQEELVRSLE  QA QS FWR VFA
Sbjct: 1   MKKLARKFRRNSEDHKYSLPVHDDDSRPLDS---KEQEELVRSLETNQAHQSRFWRTVFA 57

Query: 61  GFLFSYAVFQLYSIYQMATSPWELRYQAYFMEDMESWMVISAG 103
             +  Y +F LYSI+   +SPWELRY AYFME+++SWM+ISA 
Sbjct: 58  ALVSCYILFLLYSIFHQVSSPWELRYHAYFMEEIDSWMIISAD 100