Jatropha Genome Database

JcCB0480341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0480341.10 - phase: 0 /partial
         (96 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g097390.1 Arginine decarboxylase chr04_pseudomolecule...    77   2e-15

>IMGA|Medtr4g097390.1 Arginine decarboxylase
          chr04_pseudomolecule_IMGAG_V3 20836174-20833237 E
          EGN_Mt090430 20090702
          Length = 730

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 4/98 (4%)

Query: 1  MPALACC--VDAALAPPGYANHAGDSSLQSSILFSGVXXXXXXXXXXXIDNSPFSHWSPS 58
          MPALAC     A L PPGYA  AGD++     L                D    ++WSPS
Sbjct: 1  MPALACVDVTTALLPPPGYA-LAGDTTTLPPPLTFTTTPGVTAINNNG-DEVSDTNWSPS 58

Query: 59 LSAALYKIDGWGAPYFSVNSSGNIAVHPYGTDTLAHQE 96
          LSA L+K+DGWG PYF VN++G+I+V P+G+ T++HQE
Sbjct: 59 LSAKLFKVDGWGFPYFGVNTAGDISVRPHGSATMSHQE 96