Jatropha Genome Database

JcCB0477181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0477181.10 + phase: 0 /partial
         (126 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g157480.1 4Fe-4S ferredoxin, iron-sulfur binding; Cyc...    77   2e-15

>IMGA|Medtr4g157480.1 4Fe-4S ferredoxin, iron-sulfur binding;
           Cyclin-like F-box chr04_pseudomolecule_IMGAG_V3
           39266762-39265146 F EGN_Mt090430 20090702
          Length = 320

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 1   NEKITDDILLQLTNRAQGNLQCLSLIECPRITDDGLKHVLENNPRLTKLSVPGCTRLSIE 60
           N +++DD LL++T++A G LQ L+L+ C  + D GL+ V+E NP + +L +P CT ++ E
Sbjct: 72  NSRLSDDTLLKITSKANGRLQTLALMNCIHVADHGLQRVVEQNPFIEELHIPACTGITPE 131

Query: 61  GIVTSLKAFRSMGTQGVKHLRIGGLYGVTQKHFEELKFLLGSDNHMQQN-TYKPHYYHR 118
           G++T++K         +  L + G+Y +   H + L   L  +  ++   T +P YYH+
Sbjct: 132 GVLTAVKTL-CQRANCLTTLSLNGIYNLQNDHLDVLTSNLRKNLPLEDELTQQPIYYHK 189