Jatropha Genome Database

JcCB0469141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0469141.10 + phase: 2 /pseudo/partial
         (99 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g110300.1 Lissencephaly type-1-like homology motif; c...    62   7e-11
IMGA|Medtr1g068870.3 Lissencephaly type-1-like homology motif; c...    62   1e-10
IMGA|Medtr1g068870.1 Lissencephaly type-1-like homology motif; W...    61   1e-10
IMGA|Medtr1g068870.2 Lissencephaly type-1-like homology motif; W...    61   1e-10
IMGA|Medtr7g064530.1 Lissencephaly type-1-like homology motif; W...    49   8e-07

>IMGA|Medtr4g110300.1 Lissencephaly type-1-like homology motif;
           chr04_pseudomolecule_IMGAG_V3 24955482-24966577 E
           EGN_Mt090430 20090702
          Length = 662

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 36/39 (92%), Gaps = 2/39 (5%)

Query: 1   LKHSNPMDSETS-QPLLDARMCLLKPATNHPGQLVQGNS 38
           +K+SNPMD+ETS QPLLDARM LLK +TNHPGQ+VQGNS
Sbjct: 145 MKNSNPMDTETSSQPLLDARMALLK-STNHPGQMVQGNS 182


>IMGA|Medtr1g068870.3 Lissencephaly type-1-like homology motif;
           chr01_pseudomolecule_IMGAG_V3 13900361-13886380 E
           EGN_Mt090430 20090702
          Length = 784

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 36/39 (92%), Gaps = 2/39 (5%)

Query: 1   LKHSNPMDSETS-QPLLDARMCLLKPATNHPGQLVQGNS 38
           +K+SNPMD+ETS QPLLDARM LLK +TNHPGQ+VQGNS
Sbjct: 145 MKNSNPMDTETSSQPLLDARMALLK-STNHPGQMVQGNS 182


>IMGA|Medtr1g068870.1 Lissencephaly type-1-like homology motif;
           WD40-like; chr01_pseudomolecule_IMGAG_V3
           13900361-13886380 E EGN_Mt090430 20090702
          Length = 787

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 36/39 (92%), Gaps = 2/39 (5%)

Query: 1   LKHSNPMDSETS-QPLLDARMCLLKPATNHPGQLVQGNS 38
           +K+SNPMD+ETS QPLLDARM LLK +TNHPGQ+VQGNS
Sbjct: 145 MKNSNPMDTETSSQPLLDARMALLK-STNHPGQMVQGNS 182


>IMGA|Medtr1g068870.2 Lissencephaly type-1-like homology motif;
           WD40-like; chr01_pseudomolecule_IMGAG_V3
           13900361-13886380 E EGN_Mt090430 20090702
          Length = 786

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 36/39 (92%), Gaps = 2/39 (5%)

Query: 1   LKHSNPMDSETS-QPLLDARMCLLKPATNHPGQLVQGNS 38
           +K+SNPMD+ETS QPLLDARM LLK +TNHPGQ+VQGNS
Sbjct: 145 MKNSNPMDTETSSQPLLDARMALLK-STNHPGQMVQGNS 182


>IMGA|Medtr7g064530.1 Lissencephaly type-1-like homology motif;
           WD40-like; chr07_pseudomolecule_IMGAG_V3
           13019320-13011159 E EGN_Mt090430 20090702
          Length = 784

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 1   LKHSNPMDSETSQPLLDA-RMCLLKPATNHPGQLVQGNSG 39
           +KH + MDS+ S  L+DA RM LLK AT+H GQLV GNSG
Sbjct: 151 MKHPHSMDSDVSPNLIDANRMALLKSATSHQGQLVHGNSG 190