Jatropha Genome Database

JcCB0469081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0469081.10 + phase: 0 /pseudo/partial
         (207 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g049570.1 Strictosidine synthase; TolB, C-terminal ch...   141   3e-34
IMGA|Medtr2g049560.1 Strictosidine synthase; TolB, C-terminal ch...   135   1e-32
IMGA|Medtr2g049530.1 Strictosidine synthase; TolB, C-terminal ch...   127   4e-30

>IMGA|Medtr2g049570.1 Strictosidine synthase; TolB, C-terminal
           chr02_pseudomolecule_IMGAG_V3 13581903-13585508 E
           EGN_Mt090430 20090702
          Length = 372

 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 82/103 (79%)

Query: 102 NINLAPDGSFWIGLLQLTSDWLKFVHTSKLSKHLVASFPKLIELVTGLRKKAMVVNVAAD 161
           NINLAPDGSFWI L+QLTS  L FVHTS + KHL+ASFP+LI L+    K AMV+NV  +
Sbjct: 266 NINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLINSATKSAMVLNVGTE 325

Query: 162 GRIIRMFDDPVGKVMSFVTSAFEFDGYLYLGSLNTNFIGKLPL 204
           G IIR F D  GKV+SFVTSA EF+ +LYLGSLN++F+GKLPL
Sbjct: 326 GNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL 368


>IMGA|Medtr2g049560.1 Strictosidine synthase; TolB, C-terminal
           chr02_pseudomolecule_IMGAG_V3 13575491-13579530 E
           EGN_Mt090430 20090702
          Length = 352

 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 81/103 (78%)

Query: 102 NINLAPDGSFWIGLLQLTSDWLKFVHTSKLSKHLVASFPKLIELVTGLRKKAMVVNVAAD 161
           NINLAPDGSFWI L+Q+TS+ + FVHTSK+SKHLVA FP+L+ ++  + K AMVV V  +
Sbjct: 247 NINLAPDGSFWIALIQVTSERMGFVHTSKVSKHLVALFPRLVNMINSVTKSAMVVKVTTE 306

Query: 162 GRIIRMFDDPVGKVMSFVTSAFEFDGYLYLGSLNTNFIGKLPL 204
           G II+ F D  GK ++FVTSA EF+  LYLGSLNT+F+GK PL
Sbjct: 307 GNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349


>IMGA|Medtr2g049530.1 Strictosidine synthase; TolB, C-terminal
           chr02_pseudomolecule_IMGAG_V3 13555691-13560610 E
           EGN_Mt090430 20090702
          Length = 360

 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 77/103 (74%)

Query: 102 NINLAPDGSFWIGLLQLTSDWLKFVHTSKLSKHLVASFPKLIELVTGLRKKAMVVNVAAD 161
           NINLAPDGSFWI L+Q+TS+   FVHTSK+ KHL+A FP+L  L++   K AMVV V  +
Sbjct: 255 NINLAPDGSFWIALIQITSEKTGFVHTSKVFKHLIALFPRLFNLISSATKSAMVVKVDIE 314

Query: 162 GRIIRMFDDPVGKVMSFVTSAFEFDGYLYLGSLNTNFIGKLPL 204
           G II+ F D  GK++ FVTSA EF+ +LYLGS+  +F+GK PL
Sbjct: 315 GNIIKKFGDDNGKIIDFVTSAIEFEDHLYLGSIKCDFVGKFPL 357