Jatropha Genome Database

JcCB0467821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0467821.10 - phase: 0 /partial
         (395 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g109600.1 Carbamoyl-phosphate synthase, small subunit...   591   e-169
IMGA|Medtr3g144200.1 Carbamoyl-phosphate synthase, small subunit...   562   e-160
IMGA|Medtr8g109600.2 Carbamoyl-phosphate synthase, small subunit...   457   e-129

>IMGA|Medtr8g109600.1 Carbamoyl-phosphate synthase, small subunit;
           Glutamine amidotransferase, class I, active site
           chr08_pseudomolecule_IMGAG_V3 24622665-24629470 E
           EGN_Mt090430 20090702
          Length = 431

 Score =  591 bits (1524), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 277/334 (82%), Positives = 302/334 (90%), Gaps = 1/334 (0%)

Query: 32  YQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSISTSNWRCTKTL 91
           YQEILTDPSYAGQFVLMTNPHIGNTG+NFDDEES QCFL+GLVIRSLSISTSNWRC K L
Sbjct: 82  YQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESTQCFLSGLVIRSLSISTSNWRCEKDL 141

Query: 92  GDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEDSKTDEELLQMSKSWDIVGVDLI 151
           GDYL ERN+MGIYDVDTRAITRRLR+DGSLIGVLST++SKTDEELLQMSKSWDIVG+DLI
Sbjct: 142 GDYLTERNVMGIYDVDTRAITRRLREDGSLIGVLSTDNSKTDEELLQMSKSWDIVGIDLI 201

Query: 152 SDVSCTSPYEWVDQTNPEWDFNS-EGSGEVYHVVAYDFGIKHNILRRLASYGCKITVVPS 210
           S VSC SP+EW+D+T  EW+F+S EG  + +HVVAYDFGIKHNILRRLASYGCKITVVPS
Sbjct: 202 SGVSCKSPHEWIDRTREEWEFSSSEGPRDTFHVVAYDFGIKHNILRRLASYGCKITVVPS 261

Query: 211 KWPALETLKLKPDGVLFSNGPGDPSAVPYAVQTVKELLGKVPVFGICMGHQLLGQALGGK 270
            WPA ETLKL PDGVLFSNGPGDPSAVPYAV+TVK ++GKVPVFGICMGHQLLGQALGG 
Sbjct: 262 TWPASETLKLNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGT 321

Query: 271 TFKMKFGHHGGNHPVRNVRQNRVEISAQNHNYAVDPASLPEGVEVTHINLNDGSCAGLAY 330
           T+KMKFGHHGGNHPVRN+R  RVEIS+QNHNYAVDPA+LP+GVEVTHINLND SCAGLA+
Sbjct: 322 TYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPKGVEVTHINLNDSSCAGLAF 381

Query: 331 PALNIMSLQYHPEASPGPHDSDMGKIRFSHFCVQ 364
           PA  ++SLQYHPEASPGPHDSD     F     Q
Sbjct: 382 PARKVVSLQYHPEASPGPHDSDNAFKEFVELMKQ 415


>IMGA|Medtr3g144200.1 Carbamoyl-phosphate synthase, small subunit;
           Glutamine amidotransferase, class I, active site
           chr03_pseudomolecule_IMGAG_V3 37326662-37323278 E
           EGN_Mt090430 20090702
          Length = 419

 Score =  562 bits (1448), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/322 (82%), Positives = 289/322 (89%), Gaps = 14/322 (4%)

Query: 32  YQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSISTSNWRCTKTL 91
           YQEILTDPSYAGQFVLMTNPHIGNTG+NFDDEES +CFL+GLVIRSLSISTSNWRC K L
Sbjct: 83  YQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESTECFLSGLVIRSLSISTSNWRCVKDL 142

Query: 92  GDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEDSKTDEELLQMSKSWDIVGVDLI 151
           GDYL ERN+MGIYDVDTRAITRRLR+DGSLIGVLST++SKTDEELLQMSKSWDIVG+DLI
Sbjct: 143 GDYLTERNVMGIYDVDTRAITRRLREDGSLIGVLSTDNSKTDEELLQMSKSWDIVGIDLI 202

Query: 152 SDVSCTSPYEWVDQTNPEWDF-NSEGSGEVYHVVAYDFGIKHNILRRLASYGCKITVVPS 210
           S VSC SPYEWVD+T  EW+F +SEG  + +HVVAYDFGIKHNILRRLASYGCKIT    
Sbjct: 203 SGVSCKSPYEWVDRTKEEWEFSSSEGPRDTFHVVAYDFGIKHNILRRLASYGCKIT---- 258

Query: 211 KWPALETLKLKPDGVLFSNGPGDPSAVPYAVQTVKELLGKVPVFGICMGHQLLGQALGGK 270
                    L PDGVLFSNGPGDPSAVPYAV+TVK ++GKVPVFGICMGHQLLGQALGG 
Sbjct: 259 ---------LNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGT 309

Query: 271 TFKMKFGHHGGNHPVRNVRQNRVEISAQNHNYAVDPASLPEGVEVTHINLNDGSCAGLAY 330
           T+KMKFGHHGGNHPVRN+R  RVEIS+QNHNYAVDPA+LPEGVEVTHINLND SCAGLA+
Sbjct: 310 TYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPEGVEVTHINLNDSSCAGLAF 369

Query: 331 PALNIMSLQYHPEASPGPHDSD 352
           PA  I+SLQYHPEASPGPHDSD
Sbjct: 370 PAQKIVSLQYHPEASPGPHDSD 391


>IMGA|Medtr8g109600.2 Carbamoyl-phosphate synthase, small subunit;
           Glutamine amidotransferase, class I, active site
           chr08_pseudomolecule_IMGAG_V3 24622665-24629470 E
           EGN_Mt090430 20090702
          Length = 281

 Score =  457 bits (1175), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/265 (81%), Positives = 237/265 (89%), Gaps = 1/265 (0%)

Query: 101 MGIYDVDTRAITRRLRQDGSLIGVLSTEDSKTDEELLQMSKSWDIVGVDLISDVSCTSPY 160
           MGIYDVDTRAITRRLR+DGSLIGVLST++SKTDEELLQMSKSWDIVG+DLIS VSC SP+
Sbjct: 1   MGIYDVDTRAITRRLREDGSLIGVLSTDNSKTDEELLQMSKSWDIVGIDLISGVSCKSPH 60

Query: 161 EWVDQTNPEWDFNS-EGSGEVYHVVAYDFGIKHNILRRLASYGCKITVVPSKWPALETLK 219
           EW+D+T  EW+F+S EG  + +HVVAYDFGIKHNILRRLASYGCKITVVPS WPA ETLK
Sbjct: 61  EWIDRTREEWEFSSSEGPRDTFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLK 120

Query: 220 LKPDGVLFSNGPGDPSAVPYAVQTVKELLGKVPVFGICMGHQLLGQALGGKTFKMKFGHH 279
           L PDGVLFSNGPGDPSAVPYAV+TVK ++GKVPVFGICMGHQLLGQALGG T+KMKFGHH
Sbjct: 121 LNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGTTYKMKFGHH 180

Query: 280 GGNHPVRNVRQNRVEISAQNHNYAVDPASLPEGVEVTHINLNDGSCAGLAYPALNIMSLQ 339
           GGNHPVRN+R  RVEIS+QNHNYAVDPA+LP+GVEVTHINLND SCAGLA+PA  ++SLQ
Sbjct: 181 GGNHPVRNLRTGRVEISSQNHNYAVDPATLPKGVEVTHINLNDSSCAGLAFPARKVVSLQ 240

Query: 340 YHPEASPGPHDSDMGKIRFSHFCVQ 364
           YHPEASPGPHDSD     F     Q
Sbjct: 241 YHPEASPGPHDSDNAFKEFVELMKQ 265