Jatropha Genome Database

JcCB0467621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0467621.10 - phase: 1 /TE/pseudo/partial
         (119 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g087380.1 Tetratricopeptide-like helical chr03_pseudo...    94   2e-20

>IMGA|Medtr3g087380.1 Tetratricopeptide-like helical
           chr03_pseudomolecule_IMGAG_V3 20754903-20743710 H
           EGN_Mt090430 20090702
          Length = 534

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 2/98 (2%)

Query: 1   IILGENDNAVFASAXXXXXXXXXXXXXXXXXLRKIEDGSVISNEHTSKWRIFTDNGREYF 60
           + +G + N  FA                   LRKIEDGSV SN HT+KWR+FTD  RE F
Sbjct: 72  LTMGISANTAFAEDVTTETSSGNSANDDLNGLRKIEDGSVASNIHTAKWRVFTDKARELF 131

Query: 61  VQGKLEQAEKFFFSALEEAKKGFGDRDPHVASACNNLG 98
            +     AE+ F +A++EAK+GFG++DPHVAS+CNNL 
Sbjct: 132 FEA--YDAERLFVAAIKEAKEGFGEQDPHVASSCNNLA 167