Jatropha Genome Database

JcCB0465031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0465031.10 - phase: 1 /pseudo/partial
         (251 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g067080.1 Homocysteine S-methyltransferase chr05_pseu...   226   8e-60

>IMGA|Medtr5g067080.1 Homocysteine S-methyltransferase
           chr05_pseudomolecule_IMGAG_V3 23774075-23769436 E
           EGN_Mt090430 20090702
          Length = 326

 Score =  226 bits (576), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 115/236 (48%), Positives = 152/236 (64%), Gaps = 7/236 (2%)

Query: 6   QVHLDYLDAGANIILTASYQATIQGFEAKGLSXXXXXXXXXXSVEIACEAREIYYDNCSK 65
           +VH++YL+AGA+I++T+SYQATI GF +KGLS          SV++A EAR+ ++ +  +
Sbjct: 56  KVHMEYLEAGADILVTSSYQATIPGFLSKGLSIEEGESLLQRSVKLAVEARDSFWSSAKR 115

Query: 66  SSWDFMESGNVTRRPILVAASIGSYGAYLADGSEYSGNYGDSVSLQTLKDFHRRRLQILA 125
           +       GN  RR  LVAASIGSYGAYLADGSEY G YG  VSL  LKDFHRRRLQ+L 
Sbjct: 116 NP------GNKYRR-ALVAASIGSYGAYLADGSEYRGLYGPDVSLVKLKDFHRRRLQVLV 168

Query: 126 KAGADIIAFETIPNXXXXXXXXXXXXXXDIKIPAWFSFNSKDGINVVSGDSISECASIAD 185
           +AG D++AFETIPN              +++IP+W  F S DG N  SG+S   C  + +
Sbjct: 169 EAGPDLLAFETIPNKLEAQACVELLEEINVQIPSWICFTSVDGENAPSGESFQYCLEVIN 228

Query: 186 SCKQLVAVGINCTPPRFIRELILSIAKVTNKPVVIYPNSGETYDAERKIWVVSYIF 241
              ++ AVGINC PP F+  LI    ++TNK +V+YPNSGE +D   K W+ S  F
Sbjct: 229 KSNKVEAVGINCAPPHFMESLIPKFKQLTNKAIVVYPNSGEVWDGIAKKWLPSKCF 284