Jatropha Genome Database

JcCB0463411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0463411.10 - phase: 2 /pseudo/partial
         (86 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g126150.1 Alba, DNA/RNA-binding protein chr02_pseudom...    89   4e-19
IMGA|Medtr5g007110.1 Uncharacterised conserved protein UCP030333...    65   1e-11

>IMGA|Medtr2g126150.1 Alba, DNA/RNA-binding protein
          chr02_pseudomolecule_IMGAG_V3 30499152-30501662 E
          EGN_Mt090430 20090702
          Length = 136

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 44/49 (89%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRR 79
          KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVT+AEILK  G  + +
Sbjct: 33 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEK 81


>IMGA|Medtr5g007110.1 Uncharacterised conserved protein UCP030333,
          DNA/RNA-binding Alba-related
          chr05_pseudomolecule_IMGAG_V3 981624-980078 E
          EGN_Mt090430 20090702
          Length = 138

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 39/49 (79%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRR 79
          KKPLFFY+N+AK++++  N+VEL ALG AI T++ I+EILK  GW + +
Sbjct: 48 KKPLFFYLNIAKKHLKLDNDVELCALGTAIPTIILISEILKRNGWAIEK 96