Jatropha Genome Database

JcCB0461271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0461271.10 + phase: 0 /partial
         (136 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g129450.1 TraB determinant chr01_pseudomolecule_IMGAG...   133   3e-32

>IMGA|Medtr1g129450.1 TraB determinant chr01_pseudomolecule_IMGAG_V3
           28917754-28916492 E EGN_Mt090430 20090702
          Length = 149

 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/128 (49%), Positives = 85/128 (66%)

Query: 4   LIKSTFPYFSKYRNIPNIKSVKPLKFSIKPPPPDFDFRSEILQQSRTTIAKSYPQLLDLA 63
           +IK TFP F+      +  S++PLK S+KPPPPDF+++ EI  +SR  I + YP+LLDLA
Sbjct: 5   IIKPTFPIFTTNPFFISKTSLRPLKVSVKPPPPDFNYKLEISDESRAVIEECYPELLDLA 64

Query: 64  DTGNLVVIEKQLFGPVPAWRTEFVEPDAIWLVGTTHICXXXXXXXXXXXXXXXXXXXXXE 123
           D G+LV+++K+ FGPVP+WRTEFVEP+ IWL+GTTH+                      E
Sbjct: 65  DNGSLVLVQKKRFGPVPSWRTEFVEPEYIWLIGTTHVSKESAMDVERVVKAVKPDNVVVE 124

Query: 124 LCKSRQIS 131
           LC+SRQIS
Sbjct: 125 LCRSRQIS 132