Jatropha Genome Database

JcCB0460891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0460891.10 - phase: 0 
         (121 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC235092_10.1 Male sterility protein AC235092.1 44793-34419...    77   2e-15
IMGA|Medtr4g072240.1 Male sterility protein chr04_pseudomolecule...    77   2e-15
IMGA|Medtr4g069540.1 Glycoside hydrolase, chitinase active site;...    76   4e-15
IMGA|AC235092_6.1 Male sterility protein AC235092.1 24577-23141 ...    71   1e-13
IMGA|Medtr6g033430.1 acyl CoA reductase, related chr06_pseudomol...    49   5e-07

>IMGA|AC235092_10.1 Male sterility protein AC235092.1 44793-34419 E
           EGN_Mt090430 20090702
          Length = 492

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 13  HTNEPSDNA--MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSF 70
           H N+P D    +GSSVRNP+RY +  D+GL YF   PWI KD   VKVGK+ +L NM SF
Sbjct: 327 HANQPRDGVYHVGSSVRNPLRYQSFHDYGLKYFKAKPWINKDGTVVKVGKMTILTNMASF 386

Query: 71  PRYM 74
            RY+
Sbjct: 387 QRYI 390


>IMGA|Medtr4g072240.1 Male sterility protein
           chr04_pseudomolecule_IMGAG_V3 13816167-13811817 E
           EGN_Mt090430 20090702
          Length = 431

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 13  HTNEPSDNAM---GSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNS 69
           H N+P D+++   GSSV NPVRY +L+D+   YFT  P   K+ K +KVGKV VL+NMNS
Sbjct: 265 HANQPCDDSIYHVGSSVGNPVRYESLRDYCFRYFTAKPCFDKEGKAIKVGKVTVLENMNS 324

Query: 70  FPRYM 74
           F RYM
Sbjct: 325 FQRYM 329


>IMGA|Medtr4g069540.1 Glycoside hydrolase, chitinase active site;
           Male sterility protein chr04_pseudomolecule_IMGAG_V3
           13302157-13295951 E EGN_Mt090430 20090702
          Length = 386

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 3/65 (4%)

Query: 13  HTNEPSDNAM---GSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNS 69
           H N P+++A+   GSS+R P+ YS+LQ+FG  +F   P+I KD KPVKVGKV V  NM+S
Sbjct: 250 HANHPNNDAIYHVGSSIRRPLMYSDLQEFGFRHFKAKPYINKDGKPVKVGKVTVFSNMDS 309

Query: 70  FPRYM 74
           F R+M
Sbjct: 310 FSRFM 314


>IMGA|AC235092_6.1 Male sterility protein AC235092.1 24577-23141 E
           EGN_Mt090430 20090702
          Length = 213

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 13  HTNEPSDNAM---GSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNS 69
           H N+P+DN +   GSS+RNP+ Y   +D+ L YFT+ P I KD K +KVG + V  N+ S
Sbjct: 46  HANQPNDNIIYHVGSSIRNPITYRTFRDYNLRYFTKKPLINKDGKSIKVGNITVFSNIAS 105

Query: 70  FPRYM 74
           F RYM
Sbjct: 106 FRRYM 110


>IMGA|Medtr6g033430.1 acyl CoA reductase, related
          chr06_pseudomolecule_IMGAG_V3 7397026-7396369 H
          EGN_Mt090430 20090702
          Length = 138

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 22 MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGK 60
          +GSS RNP +YS+L D    YFT+NPWI K+++PV V K
Sbjct: 55 IGSSSRNPFKYSDLIDDMHCYFTKNPWINKNDRPVHVEK 93