Jatropha Genome Database

JcCB0459051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0459051.10 + phase: 0 
         (178 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g088880.1 BRO1 chr06_pseudomolecule_IMGAG_V3 18030668...   184   2e-47
IMGA|Medtr7g094330.1 BRO1 chr07_pseudomolecule_IMGAG_V3 21361297...    75   3e-14

>IMGA|Medtr6g088880.1 BRO1 chr06_pseudomolecule_IMGAG_V3
           18030668-18034506 E EGN_Mt090430 20090702
          Length = 424

 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/174 (55%), Positives = 124/174 (71%), Gaps = 4/174 (2%)

Query: 1   MGCLSSTQRDSGGNGKWPRNVGEVALFVPGMRIPKPVDFTQP-LGDGLSRNLIERLSALR 59
           MGC+ ST +DSGGN + P ++GEV+++VPG+RIPKPVDF+Q  LGD LS+N+IER+SALR
Sbjct: 1   MGCIGSTPKDSGGNRRRPGSIGEVSVYVPGLRIPKPVDFSQSSLGDYLSKNIIERISALR 60

Query: 60  TRIVVMAGQEXXXXXXXXXXXXQHGGSTMLDLQQALEDYLPVLLGLVENGNQLQQELQFS 119
           TRIVVMA QE            +  GST+ +L QALEDYLPVLLGLV++G+ LQ ++QF 
Sbjct: 61  TRIVVMASQEGPTITRTKK---KKCGSTLANLLQALEDYLPVLLGLVKDGSHLQYKVQFV 117

Query: 120 WLNQEDTAEETTMSNFWYELLSVLHXXXXXXXXXXXXXXXXITSNDGHLSKLSE 173
           W+NQED  EETTMSN WYE+LSVLH                 +S+DGH  ++S+
Sbjct: 118 WMNQEDEKEETTMSNAWYEVLSVLHLMSMLLLSKANLLLLPRSSSDGHQQRVSD 171


>IMGA|Medtr7g094330.1 BRO1 chr07_pseudomolecule_IMGAG_V3
           21361297-21364499 E EGN_Mt090430 20090702
          Length = 412

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 20/144 (13%)

Query: 1   MGCLSSTQRDSGGNGKWPRNVGEVALFVPGMRIPKPVDFTQPLGDGLSRNLIERLSALRT 60
           MGC  S  +      K   +  EV +  P +RIP   D  + L   + ++L ++LS+LR 
Sbjct: 1   MGCTYSVYK------KKKSSFPEVVVLTPSIRIPVQSDLQRALKGLVPKDLADKLSSLRN 54

Query: 61  RIVVMAGQEXXXXXXXXXXXXQHGGSTMLDLQQALEDYLPVLLGLVENGNQLQQELQFSW 120
           +IV++A                  GS + +L++AL +YL VL+GL +    L+  ++F W
Sbjct: 55  QIVLVA--------------EDTDGSAIAELRRALNEYLSVLIGLTKKEYGLEGLIEFKW 100

Query: 121 LNQEDTAEETTMSNFWYELLSVLH 144
            N E   +++++SN W+E+LS +H
Sbjct: 101 KNFEVGKQDSSISNVWFEVLSCVH 124