Jatropha Genome Database

JcCB0458961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0458961.10 + phase: 0 /pseudo/partial
         (252 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g025160.1 2-oxoglutarate dehydrogenase, E1 component ...   185   2e-47

>IMGA|Medtr7g025160.1 2-oxoglutarate dehydrogenase, E1 component
           chr07_pseudomolecule_IMGAG_V3 6058895-6053003 E
           EGN_Mt090430 20090702
          Length = 1023

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 135 QPLLITSMSCGASLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHADLEEGI 194
           +PL++ S     +LLR K C+SNLSEFDDVQGHPGFDKQGTRFKRLIKD+NDH  +EEGI
Sbjct: 838 KPLIVMSPK---NLLRSKSCRSNLSEFDDVQGHPGFDKQGTRFKRLIKDRNDHNTVEEGI 894

Query: 195 RRLVLCSGKVYYELDEERKKTGAKDVAICRVEQLCPFPYDLIQRELKRYPS 245
           RRLVLCSGKVYYELD+ R K  A DVAICRVEQLCPFPYDL+QRELKRYP+
Sbjct: 895 RRLVLCSGKVYYELDDHRSKVDASDVAICRVEQLCPFPYDLVQRELKRYPN 945



 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/29 (82%), Positives = 27/29 (93%)

Query: 1   VHDQENGEKYCPLDHVVMNQDEEMFTVSN 29
           VHDQ  GEKYCPLD+V++NQDEEMFTVSN
Sbjct: 677 VHDQTTGEKYCPLDNVILNQDEEMFTVSN 705