Jatropha Genome Database

JcCB0458291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0458291.10 + phase: 1 /partial
         (160 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g023130.1 Porin, eukaryotic type chr01_pseudomolecule...   208   9e-55
IMGA|Medtr5g015680.1 Porin, eukaryotic type chr05_pseudomolecule...   188   1e-48
IMGA|Medtr8g128760.1 Porin, eukaryotic type chr08_pseudomolecule...   131   1e-31
IMGA|Medtr7g008680.1 Porin, eukaryotic type chr07_pseudomolecule...   113   5e-26
IMGA|Medtr8g112890.1 Porin, eukaryotic type chr08_pseudomolecule...    74   3e-14

>IMGA|Medtr1g023130.1 Porin, eukaryotic type
           chr01_pseudomolecule_IMGAG_V3 5043912-5042296 E
           EGN_Mt090430 20090702
          Length = 205

 Score =  208 bits (530), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 104/161 (64%), Positives = 125/161 (77%), Gaps = 4/161 (2%)

Query: 4   GITNHTDL----IVDFSATIGTPTIAFGAETSYATASGEFSKYNAGVSYTSPDTNASVIL 59
           G T   DL     +DFSATIGTP IAFGAETSY+T  G F+KYNAG+    P ++ASV+L
Sbjct: 45  GFTAAVDLNRKPAIDFSATIGTPGIAFGAETSYSTLVGNFTKYNAGLCLKLPSSSASVLL 104

Query: 60  ADKGNSIKVSYLRHLEMMNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHG 119
           ADKG+S+KVSYLR LE +N   +VGEI+R FS NENTLTVGCSYV DPQT +K KLNNHG
Sbjct: 105 ADKGDSMKVSYLRDLEKLNGGAIVGEISRRFSTNENTLTVGCSYVVDPQTTVKAKLNNHG 164

Query: 120 SLGALVQHEFKPKSFLTISGSFDTKALHKNPKFGLALSLKP 160
           +L A++QH+   KSFLTISG+F+TKAL  +PKFG +L LKP
Sbjct: 165 NLEAVLQHDLTHKSFLTISGAFETKALENSPKFGFSLLLKP 205


>IMGA|Medtr5g015680.1 Porin, eukaryotic type
           chr05_pseudomolecule_IMGAG_V3 5273619-5270332 E
           EGN_Mt090430 20090702
          Length = 276

 Score =  188 bits (477), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 111/149 (74%)

Query: 12  IVDFSATIGTPTIAFGAETSYATASGEFSKYNAGVSYTSPDTNASVILADKGNSIKVSYL 71
           I D SAT+G+PT+AFGAE  Y T SG F+KYN G+S+T  D++ASVI+ DKG+SIKVSYL
Sbjct: 128 IFDVSATVGSPTLAFGAEAGYDTKSGSFTKYNTGISFTKLDSSASVIIGDKGDSIKVSYL 187

Query: 72  RHLEMMNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHGSLGALVQHEFKP 131
            HL+ + +   V +I R FS N+NT+TVG S+  DP T +K + NN G +G L+QHE  P
Sbjct: 188 HHLDQIKKSAAVVDITRRFSTNQNTITVGGSFAVDPLTQIKARFNNQGKVGGLLQHELFP 247

Query: 132 KSFLTISGSFDTKALHKNPKFGLALSLKP 160
           KS LTISG  DTKAL K PKFGLA++LKP
Sbjct: 248 KSVLTISGEVDTKALEKKPKFGLAIALKP 276


>IMGA|Medtr8g128760.1 Porin, eukaryotic type
           chr08_pseudomolecule_IMGAG_V3 30206409-30211134 F
           EGN_Mt090430 20090702
          Length = 279

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/149 (42%), Positives = 97/149 (65%), Gaps = 1/149 (0%)

Query: 13  VDFSATIGTPTIAFGAETSYATASGEFSKYNAGVSYTSPDTNASVILADKGNSIKVSYLR 72
           ++ SA IG+  I+ GAE  + T S  FS YNAG+++  PD +A+++LADKG S+K SY+ 
Sbjct: 131 LELSAAIGSKDISMGAEVGFDTTSASFSTYNAGIAFNKPDFSATLMLADKGQSLKASYIH 190

Query: 73  HLEMMNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHGSLGALVQHEFKPK 132
           +++  + LTV  E+    S++EN  T G S   DP+TVLKT+ ++ G      Q  ++P 
Sbjct: 191 YVDRPDGLTVAAELAHKLSSSENRFTFGTSQSIDPKTVLKTRFSDDGKAAFQCQRAWRPN 250

Query: 133 SFLTISGSFDTKALHKNP-KFGLALSLKP 160
           S +T+S  +D+K +  +P KFGLALSLKP
Sbjct: 251 SLITLSAEYDSKKIIGSPAKFGLALSLKP 279


>IMGA|Medtr7g008680.1 Porin, eukaryotic type
           chr07_pseudomolecule_IMGAG_V3 1350752-1345913 E
           EGN_Mt090430 20090702
          Length = 277

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 84/149 (56%)

Query: 12  IVDFSATIGTPTIAFGAETSYATASGEFSKYNAGVSYTSPDTNASVILADKGNSIKVSYL 71
           +V+ S   GT  +AFG + SY T   E +K N GVS+   D   ++ L +KG+ +  SY 
Sbjct: 129 VVNLSGVFGTNALAFGGDISYDTKLRELTKSNVGVSFIKDDLLGALTLNEKGDVLNASYY 188

Query: 72  RHLEMMNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHGSLGALVQHEFKP 131
             +  +    V  ++   FS  EN  T+G  +  DP T LK ++ N     AL+QHE++P
Sbjct: 189 HVINPVTNTAVGVDMGHRFSTRENNFTLGVQHALDPLTTLKGRITNSAKASALIQHEWRP 248

Query: 132 KSFLTISGSFDTKALHKNPKFGLALSLKP 160
           KS +TIS   DTKA+ K+ K GL+L LKP
Sbjct: 249 KSLITISTELDTKAIEKSAKVGLSLVLKP 277


>IMGA|Medtr8g112890.1 Porin, eukaryotic type
           chr08_pseudomolecule_IMGAG_V3 25502516-25505198 E
           EGN_Mt090430 20090702
          Length = 244

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 1/152 (0%)

Query: 10  DLIVDFSATIGTPTIAFGAETSYATASGEFSKYNAGVSYTSPDTNASVILADKGNSIKVS 69
           D +V  S  +GT  ++ GA  +    +   +K  AG    +    AS+ L D  +++K +
Sbjct: 93  DPVVKLSGLLGTSILSLGANVALHIPTRSITKLTAGFGLNTAFLEASLTLHDSFDTLKAT 152

Query: 70  YLRHLEMMNQLTVVGEINRTFSNNENTLTVGCSYVADPQTVLKTKLNNHGSLGALVQHEF 129
               +  + Q  +  ++  + S  E  +T+G  +   P+T+LK + ++ G +GAL+Q  F
Sbjct: 153 IYHEVNPLTQTAIATQVKHSLSLKETGVTIGAQHAFFPETLLKARFDSSGKVGALIQQGF 212

Query: 130 KPKSFLTISGSFDTKAL-HKNPKFGLALSLKP 160
             + F+T++   D  A   K PK G++++L+P
Sbjct: 213 WQRFFVTMASEIDFGATDDKIPKVGVSMALRP 244