Jatropha Genome Database

JcCB0456251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456251.10 - phase: 2 /pseudo/partial
         (185 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g105810.1 SecA protein chr01_pseudomolecule_IMGAG_V3 ...    97   4e-21

>IMGA|Medtr1g105810.1 SecA protein chr01_pseudomolecule_IMGAG_V3
           21901678-21889407 E EGN_Mt090430 20090702
          Length = 1032

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 55/66 (83%)

Query: 87  VAMASLGGLLGGIFKGTDTGESTRQQYAPTVRLINGLETEMSALSDSELRNKTSVLKERA 146
           VA+ASLGGLLGGIFKG DTGE+TR+QYA TV +INGLE  +S LSDSELR+KT  L+ERA
Sbjct: 60  VAVASLGGLLGGIFKGNDTGEATRKQYAATVNVINGLEANISKLSDSELRDKTFELRERA 119

Query: 147 LNGESL 152
              ESL
Sbjct: 120 QKRESL 125