Jatropha Genome Database

JcCB0456051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456051.10 - phase: 1 /pseudo/partial
         (223 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g097390.1 Arginine decarboxylase chr04_pseudomolecule...   259   1e-69
IMGA|Medtr4g097440.1 Arginine decarboxylase chr04_pseudomolecule...    89   1e-18
IMGA|Medtr3g156420.1 ER lumen protein retaining receptor; Orn/DA...    75   3e-14
IMGA|Medtr4g080870.1 Arginine decarboxylase chr04_pseudomolecule...    74   4e-14
IMGA|Medtr2g010540.1 Arginine decarboxylase chr02_pseudomolecule...    74   5e-14

>IMGA|Medtr4g097390.1 Arginine decarboxylase
           chr04_pseudomolecule_IMGAG_V3 20836174-20833237 E
           EGN_Mt090430 20090702
          Length = 730

 Score =  259 bits (661), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/164 (79%), Positives = 141/164 (85%)

Query: 33  GLEAGSKPELLLAMSCLCKGNPDSFLVCNGFKDAEYISLALLARKLALNTXXXXXXXXXX 92
           GLEAGSKPELLLAMSCLCKGN ++FL+CNGFKD+EYISLAL+ARKLALN+          
Sbjct: 181 GLEAGSKPELLLAMSCLCKGNREAFLICNGFKDSEYISLALIARKLALNSVIVLEQEEEL 240

Query: 93  XXXXXMSKKLSIRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEGAGML 152
                +S KL IRPVIGVRAKLRTKHSGHFGSTSG+KGKFGLTT QILRVVKKLE   ML
Sbjct: 241 DMVVEISNKLCIRPVIGVRAKLRTKHSGHFGSTSGDKGKFGLTTIQILRVVKKLEQLDML 300

Query: 153 DCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGAQMQVL 196
           DCLQLLHFHIGSQIP+T LLADGVGEAAQIYCEL+RLGAQM+VL
Sbjct: 301 DCLQLLHFHIGSQIPTTELLADGVGEAAQIYCELLRLGAQMRVL 344


>IMGA|Medtr4g097440.1 Arginine decarboxylase
           chr04_pseudomolecule_IMGAG_V3 20852132-20853853 E
           EGN_Mt090430 20090702
          Length = 432

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/46 (91%), Positives = 45/46 (97%)

Query: 151 MLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGAQMQVL 196
           MLDCLQLLHFHIGSQIP+T LLADGVGEAAQIYCEL+RLGAQM+VL
Sbjct: 1   MLDCLQLLHFHIGSQIPTTELLADGVGEAAQIYCELLRLGAQMRVL 46


>IMGA|Medtr3g156420.1 ER lumen protein retaining receptor;
           Orn/DAP/Arg decarboxylase 2
           chr03_pseudomolecule_IMGAG_V3 41010513-41005039 E
           EGN_Mt090430 20090702
          Length = 493

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 46/73 (63%), Gaps = 6/73 (8%)

Query: 33  GLEAGSKPELLLAMSCLCKGNPDSFLVCNGFKDAEYISLALLARKLALNTXXXXXXXXXX 92
           GLEAGSKPELLLA+SCLCKGN ++FLVCNGFKD       L+ RKLALN           
Sbjct: 407 GLEAGSKPELLLALSCLCKGNREAFLVCNGFKD------NLVGRKLALNGVIALEQEEEL 460

Query: 93  XXXXXMSKKLSIR 105
                +S KL IR
Sbjct: 461 NMVVEISNKLYIR 473


>IMGA|Medtr4g080870.1 Arginine decarboxylase
           chr04_pseudomolecule_IMGAG_V3 16706118-16707117 E
           EGN_Mt090430 20090702
          Length = 155

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 46/73 (63%), Gaps = 6/73 (8%)

Query: 33  GLEAGSKPELLLAMSCLCKGNPDSFLVCNGFKDAEYISLALLARKLALNTXXXXXXXXXX 92
           GLEAGSKPELLLA+SCLCKGN ++FLVCNGFKD       L+ RKLALN           
Sbjct: 69  GLEAGSKPELLLALSCLCKGNREAFLVCNGFKD------NLVGRKLALNGVIALEQEEEL 122

Query: 93  XXXXXMSKKLSIR 105
                +S KL IR
Sbjct: 123 NMVVEISNKLYIR 135


>IMGA|Medtr2g010540.1 Arginine decarboxylase
           chr02_pseudomolecule_IMGAG_V3 2590168-2590705 E
           EGN_Mt090430 20090702
          Length = 155

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 46/73 (63%), Gaps = 6/73 (8%)

Query: 33  GLEAGSKPELLLAMSCLCKGNPDSFLVCNGFKDAEYISLALLARKLALNTXXXXXXXXXX 92
           GLEAGSKPELLLA+SCLCKGN ++FLVCNGFKD       L+ RKLALN           
Sbjct: 69  GLEAGSKPELLLALSCLCKGNREAFLVCNGFKD------NLVGRKLALNGVIALEQEEEL 122

Query: 93  XXXXXMSKKLSIR 105
                +S KL IR
Sbjct: 123 NMVVEISNKLYIR 135