Jatropha Genome Database

JcCB0454891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0454891.10 + phase: 0 /pseudo
         (261 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g089430.1 Checkpoint protein Rad24 chr08_pseudomolecu...   261   3e-70
IMGA|Medtr8g089430.2 Checkpoint protein Rad24 chr08_pseudomolecu...   105   2e-23

>IMGA|Medtr8g089430.1 Checkpoint protein Rad24
           chr08_pseudomolecule_IMGAG_V3 19216485-19222914 E
           EGN_Mt090430 20090702
          Length = 604

 Score =  261 bits (666), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 134/240 (55%), Positives = 166/240 (69%)

Query: 15  TQYMSKLDEFVNFIEKVRKYGSIPPSYSAESKXXXXXXXXXXXVTNGRVAFERLQNCLLL 74
           T+Y SKLDEFV+F+E++R +G IP S++ ESK           + + + A  RL++CL L
Sbjct: 183 TKYTSKLDEFVSFVERIRTFGLIPTSFTGESKPSIIYLIDDLPMMHSKAALGRLKDCLNL 242

Query: 75  LVRTTRIPTVILVTDYDKADLADNTSRYMEELQSSLESAGACKVAFNPITNNSIKKALTK 134
           LV TTRIPT ILVTDY   D AD  +R +EEL++SLES+GACK+AFNPIT NSIKK L +
Sbjct: 243 LVHTTRIPTAILVTDYGNTDSADYNARSVEELKTSLESSGACKIAFNPITVNSIKKILFR 302

Query: 135 ICKHEQFNVTAEQIDLIAKASGGDIRNAITSLQLFCVKPNMGXXXXXXXXTPSYSDGKPD 194
           IC+ EQ +VTA+ +DLIAKASGGDIR+AITSLQ FC+ PN          +P     + +
Sbjct: 303 ICQMEQCDVTADNVDLIAKASGGDIRHAITSLQFFCLNPNQVHSLSQSTRSPHALKEESN 362

Query: 195 DINSLICGFSLLFGRDETLSLFHALGKFLHNKRETEVTMGSDVCYFFYGTKFSRLPLEMD 254
               L  G SL FGRDETLSLFHALGKFLHNKRET V +  D   F    +FSRLPL+MD
Sbjct: 363 KPVELDDGSSLYFGRDETLSLFHALGKFLHNKRETGVAVEYDQNGFLIHERFSRLPLKMD 422


>IMGA|Medtr8g089430.2 Checkpoint protein Rad24
           chr08_pseudomolecule_IMGAG_V3 19216485-19221333 E
           EGN_Mt090430 20090702
          Length = 291

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 72/107 (67%)

Query: 15  TQYMSKLDEFVNFIEKVRKYGSIPPSYSAESKXXXXXXXXXXXVTNGRVAFERLQNCLLL 74
           T+Y SKLDEFV+F+E++R +G IP S++ ESK           + + + A  RL++CL L
Sbjct: 183 TKYTSKLDEFVSFVERIRTFGLIPTSFTGESKPSIIYLIDDLPMMHSKAALGRLKDCLNL 242

Query: 75  LVRTTRIPTVILVTDYDKADLADNTSRYMEELQSSLESAGACKVAFN 121
           LV TTRIPT ILVTDY   D AD  +R +EEL++SLES+GA  V  N
Sbjct: 243 LVHTTRIPTAILVTDYGNTDSADYNARSVEELKTSLESSGAYCVQSN 289