Jatropha Genome Database

JcCB0453831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453831.10 - phase: 2 /partial
         (212 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g040350.1 Zinc finger, RING-type chr08_pseudomolecule...   231   2e-61
IMGA|Medtr3g162780.1 protein binding, putative chr03_pseudomolec...   217   3e-57
IMGA|Medtr5g044950.1 Zinc finger, RING-type chr05_pseudomolecule...    77   9e-15
IMGA|Medtr8g121980.1 Zinc finger, RING-type chr08_pseudomolecule...    63   1e-10

>IMGA|Medtr8g040350.1 Zinc finger, RING-type
           chr08_pseudomolecule_IMGAG_V3 8635076-8640562 E
           EGN_Mt090430 20090702
          Length = 440

 Score =  231 bits (588), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/213 (53%), Positives = 147/213 (69%), Gaps = 4/213 (1%)

Query: 2   AFSELMATSHRERWSFDTESWGLNHEKTRXXXXXXXXXXVDFQTCGICSKLLTEKSLWSS 61
            F+ELM   H ERWS D+ES+G N ++            VD QTCG+CS  LTEKS WS+
Sbjct: 228 GFTELMGNPHMERWSVDSESFGFNCDRLARFSSRFSTSPVDLQTCGVCSNHLTEKSSWST 287

Query: 62  QKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPSCPVCTLGEKQTHKLSQKAFKA 121
           QK++ +N+LSVV+VL CGHVYHAECLE++TP+INKYDP+CPVCT GEKQT KL +KA KA
Sbjct: 288 QKIIANNDLSVVSVLICGHVYHAECLESITPEINKYDPACPVCTFGEKQTRKLFEKAMKA 347

Query: 122 ELDLKAKNKRSRNRVVDSDL---DGDSVMFNRLKGSGHEXXXXXXXXXXXXXXXXXXXFL 178
           E+D KA+NK+SRN+++D+++   D DSV+F++ K    +                   FL
Sbjct: 348 EMDSKARNKKSRNQILDNEIDDDDDDSVVFDQFKDKRRQNKGPRMDSSSSKRSSSGKPFL 407

Query: 179 KRHFSFGSSKASKSLTENHATKKKGFFWTRSMK 211
            RHFSFG SK SKS+ +NH T+KKGFFW +S K
Sbjct: 408 SRHFSFG-SKGSKSMLDNHPTRKKGFFWAKSSK 439


>IMGA|Medtr3g162780.1 protein binding, putative
           chr03_pseudomolecule_IMGAG_V3 42585832-42590432 E
           EGN_Mt090430 20090702
          Length = 451

 Score =  217 bits (552), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 141/226 (62%), Gaps = 16/226 (7%)

Query: 2   AFSELMATSHRERWSFDTESWGLNHEKTRXXXXXXXXXXVDFQTCGICSKLLTEKSLWSS 61
            F ELM T  R+RWS D+ES+G N E+            VD +TC  CSK+L EKS WS+
Sbjct: 227 GFPELMGTPQRQRWSLDSESFGSNRERLVRSSSWFSASPVDLRTCNFCSKVLKEKSPWST 286

Query: 62  QKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPSCPVCTLGEKQTHKLSQKAFKA 121
           Q +  +N+LSVVAVL CGHVYHAECLE +T DINKYDP+CPVC+ GEKQT KL++K  KA
Sbjct: 287 QNIYSNNDLSVVAVLICGHVYHAECLENMTSDINKYDPACPVCSFGEKQTMKLAKKVLKA 346

Query: 122 ELDLKAKNKRSRNRVVDSDL-----DGDSVMFNRLK----------GSGHEXXXXXXXXX 166
           E+DLKA+NKR +N+V D D+     + DSV+ +  K              +         
Sbjct: 347 EMDLKARNKRPKNQVEDGDIEYYIENNDSVVIDSFKVREPKGKGKGKGKGKGKGPQMDSS 406

Query: 167 XXXXXXXXXXFLKRHFSFGSSKASKSLTENHATKKKGFFWTRSMKA 212
                     FL+RHF+FGS K S+S+ ++H TKKKGFFWT+S KA
Sbjct: 407 SHGKISFGKPFLRRHFTFGS-KGSRSMLDSHPTKKKGFFWTKSSKA 451


>IMGA|Medtr5g044950.1 Zinc finger, RING-type
           chr05_pseudomolecule_IMGAG_V3 18711256-18703642 E
           EGN_Mt090430 20090702
          Length = 447

 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query: 46  CGICSKLLTEKSLWSSQKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPSCPVCT 105
           C +C K ++++S WSS+++V S ++    VL C HV+HAECL+  TP   K +P CPVC 
Sbjct: 299 CSLCEKFMSQRSPWSSRRIVRSGDMPAAGVLPCRHVFHAECLDQATPKTRKIEPPCPVCV 358

Query: 106 LGEKQ 110
             E+Q
Sbjct: 359 KLEEQ 363


>IMGA|Medtr8g121980.1 Zinc finger, RING-type
           chr08_pseudomolecule_IMGAG_V3 28408134-28405232 E
           EGN_Mt090430 20090702
          Length = 247

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 45  TCGICSKLLTEKSLWSSQKLVLSNELSVVAVLTCGHVYHAECLETLTPDINKYDPSCPVC 104
            C IC K L  K  +    L   NEL+VVAVL CGHVYHA+CLE  T      DPSCP+C
Sbjct: 175 VCMICEKPLRRKINFMGNSLS-CNELAVVAVLVCGHVYHADCLEQRTSVEELRDPSCPMC 233

Query: 105 T 105
            
Sbjct: 234 A 234