Jatropha Genome Database

JcCB0453321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453321.10 - phase: 0 /partial
         (151 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g065690.1 Excinuclease ABC, C subunit, N-terminal; Mu...   213   3e-56

>IMGA|Medtr1g065690.1 Excinuclease ABC, C subunit, N-terminal; MutS
           1 protein chr01_pseudomolecule_IMGAG_V3
           13157439-13142729 E EGN_Mt090430 20090702
          Length = 1224

 Score =  213 bits (542), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 101/145 (69%), Positives = 116/145 (80%), Gaps = 6/145 (4%)

Query: 6   MQVTEDFIPIISRIKASMAPLGGPKGEVSYAREHESVWFKGKRFAPAVWAGTPGEEQIKQ 65
           + VTEDF P++SRIKASM+ L  PKGE+SY+RE E+VWFKGK F P +W GTPGEEQIK 
Sbjct: 658 LAVTEDFAPVVSRIKASMSQLRAPKGEISYSREQEAVWFKGKCFIPNIWTGTPGEEQIKH 717

Query: 66  LKPAVDSKGRKVGEEWFTTIKVEDALMRYHAAIDKAKARVLELLRGLSAELQSRINILIF 125
           LK A+DSKGRKVGEEWFTT KVE AL RYH A  KA  RVLELLRGL+AELQS INI++F
Sbjct: 718 LKHALDSKGRKVGEEWFTTTKVEAALARYHEANVKANTRVLELLRGLAAELQSHINIIVF 777

Query: 126 ASMLLVIAKALFAHV------RWVF 144
           +S LLVI KAL+AHV      +WVF
Sbjct: 778 SSTLLVITKALYAHVSEGRRRKWVF 802