Jatropha Genome Database

JcCB0450851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0450851.10 + phase: 1 /pseudo/partial
         (155 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g065690.1 Excinuclease ABC, C subunit, N-terminal; Mu...   145   7e-36

>IMGA|Medtr1g065690.1 Excinuclease ABC, C subunit, N-terminal; MutS
           1 protein chr01_pseudomolecule_IMGAG_V3
           13157439-13142729 E EGN_Mt090430 20090702
          Length = 1224

 Score =  145 bits (366), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 89/121 (73%)

Query: 21  REANHIEFCRIKNVLDEILHMHRNLELTEILKSLMDPTWVATGLKIDFETLVNECEWASD 80
           +EANHIE CRIKNVLDEILHM+R  EL EILK L+ PTWVATGL IDF+TLV  CE AS 
Sbjct: 540 KEANHIELCRIKNVLDEILHMYRKSELNEILKHLIGPTWVATGLDIDFKTLVAGCEVASR 599

Query: 81  RICEMIYLEDKIDRKSDSHSVVPSEFFEDMELSWRGRVKRIHIEEEFAEVESAAQALSSA 140
           +I E+I L+ + D+K  S S +P EFFEDME  W+GR+K  +I +    V+ AA+ L+ A
Sbjct: 600 KIDEVISLDGETDQKVSSFSAIPDEFFEDMESVWKGRIKTTNINDVLTSVDKAAEDLNLA 659

Query: 141 V 141
           V
Sbjct: 660 V 660