Jatropha Genome Database

JcCB0450571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0450571.10 - phase: 2 /partial
         (381 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g117610.1 Homeodomain-like, related chr02_pseudomolec...   400   e-112
IMGA|Medtr1g125320.1 Homeodomain-like, related chr01_pseudomolec...   222   2e-58
IMGA|Medtr1g073690.1 Homeodomain-like, identical chr01_pseudomol...   205   3e-53

>IMGA|Medtr2g117610.1 Homeodomain-like, related
           chr02_pseudomolecule_IMGAG_V3 27677141-27675468 E
           EGN_Mt090430 20090702
          Length = 445

 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/383 (57%), Positives = 260/383 (67%), Gaps = 6/383 (1%)

Query: 1   FGR-EAVSPFSATNNGNGSEDDEPSFMEDGNGESS-SAAKGKNGSTWQRMKWTDNIVRLL 58
           FG+ + ++  +  N+ + SEDDE  + EDGN E+     KGK GS WQRMKWTDN+V LL
Sbjct: 64  FGKGKGIASSNHDNSNDMSEDDEHGYGEDGNCENFFDGGKGKKGSPWQRMKWTDNVVGLL 123

Query: 59  IAIVACVGDDGPFEGVEGLKRKSGILQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNK 118
           IA+V+CVG+DG   GV+G+KRKSG++QKKGKWKTVSK+MISKGCHVSPQQCEDKFNDLNK
Sbjct: 124 IAVVSCVGEDGTISGVDGVKRKSGVVQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNK 183

Query: 119 RYKRLNEILGRGTSCRVVENPALMDSM-PLSDKAKDDVRKILSSKHLFYKEMCAYHNGQR 177
           RYKRLNEILGRGT C+VVENPALMDSM  LS KAKDDVRKILSSKHLFYKEMCAYHNGQR
Sbjct: 184 RYKRLNEILGRGTCCQVVENPALMDSMVNLSAKAKDDVRKILSSKHLFYKEMCAYHNGQR 243

Query: 178 IPNCQDLDLQGCLSPLERCSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVRMD 237
           IPN  DLDL      LE   K                                    RM+
Sbjct: 244 IPNSHDLDLHSY--SLEH-GKDSRDHDGSDDEDEDNNESEDDELDNGININARGDGGRME 300

Query: 238 KYSERNKVNEEDARLWSQSGGLIGFEVEMAAIFQDPAVSLWEKKEWIKKQKLQLLEQRVS 297
            + +RNK++EED   W QS G+   E EMA +FQDP  S WEK+EWIK+Q LQL EQ V 
Sbjct: 301 GFCDRNKLSEEDGHFWPQSIGMKKLESEMARVFQDPVKSPWEKREWIKQQLLQLQEQNVD 360

Query: 298 IQSQAFELEKQRFKWLRYCSKKDREFETSXXXXXXXXXXXXQSILQLRQKQLGMDFRSSE 357
            Q++AFEL+KQ+FKWLRY SKKDRE E                IL+L+Q++   +F  SE
Sbjct: 361 FQAKAFELQKQQFKWLRYRSKKDRELEKLAMENKRMKFENEHRILKLKQREQEAEFSRSE 420

Query: 358 TSREPTSLGIDRLQGRDQIDLGR 380
            S +PTS+GI R QGR+ I+L R
Sbjct: 421 MSLDPTSIGIKRPQGREHINLAR 443


>IMGA|Medtr1g125320.1 Homeodomain-like, related
           chr01_pseudomolecule_IMGAG_V3 27623789-27622379 E
           EGN_Mt090430 20090702
          Length = 450

 Score =  222 bits (566), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 141/193 (73%), Gaps = 11/193 (5%)

Query: 9   FSATNNGNG-------SEDDEPSFMEDGNGESSSAAKGKNGST--WQRMKWTDNIVRLLI 59
            S T+ G G       SE+DEPSFMEDG        +GK GS+  WQR+KWTDN+VRL+I
Sbjct: 76  MSMTDYGKGERGKICTSEEDEPSFMEDGFDGQHEGGRGKKGSSSPWQRVKWTDNMVRLMI 135

Query: 60  AIVACVGDDGPFEGVEGL-KRKSGILQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNK 118
             V+ +G+D   +GV G  +RK  +LQKKGKW+ VSK+M  +GCHVSPQQCEDKFNDLNK
Sbjct: 136 TAVSYIGEDRTSDGVGGSGRRKFAVLQKKGKWRCVSKVMAERGCHVSPQQCEDKFNDLNK 195

Query: 119 RYKRLNEILGRGTSCRVVENPALMDSM-PLSDKAKDDVRKILSSKHLFYKEMCAYHNGQR 177
           RYK+LN++LGRGTSC VVENPAL+D +  LS+K KD+VRKILSSK LFY+EMC+YHN  R
Sbjct: 196 RYKKLNDMLGRGTSCEVVENPALLDGIYYLSEKEKDEVRKILSSKQLFYEEMCSYHNCNR 255

Query: 178 IPNCQDLDLQGCL 190
           +    D  LQ  +
Sbjct: 256 LHLPHDPALQSSM 268



 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%)

Query: 276 SLWEKKEWIKKQKLQLLEQRVSIQSQAFELEKQRFKWLRYCSKKDREFETSXXXXXXXXX 335
           + W +K+W+  +++QL EQ++ IQ++  ELEKQRFKW R+  +KDRE E           
Sbjct: 372 AAWLQKQWVDSRQVQLEEQKLQIQAEKLELEKQRFKWQRFSKQKDRELEKLSLENERMKL 431

Query: 336 XXXQSILQLRQKQLGMDF 353
              +  L+L+QK++ + F
Sbjct: 432 ENERMALELKQKEMSLGF 449


>IMGA|Medtr1g073690.1 Homeodomain-like, identical
           chr01_pseudomolecule_IMGAG_V3 14753080-14751391 E
           EGN_Mt090430 20090702
          Length = 495

 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 125/158 (79%), Gaps = 4/158 (2%)

Query: 18  SEDDEPSFMEDGNGESSSAAKGKNGSTWQRMKWTDNIVRLLIAIVACVGDDGPFEGVEGL 77
           S++DEP+F  +   ESS     +  S WQRMKWTD +VRLLI  V  +GD+   EG +  
Sbjct: 94  SDEDEPNFPAE---ESSGGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPN 150

Query: 78  KRKS-GILQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTSCRVV 136
           K+KS G+LQKKGKWK+VS+ M+ KG +VSPQQCEDKFNDLNKRYKR+N+ILG+GT+CRVV
Sbjct: 151 KKKSSGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVV 210

Query: 137 ENPALMDSMPLSDKAKDDVRKILSSKHLFYKEMCAYHN 174
           EN  L+DSM LS K KD+VRK+L+SKHLF++EMCAYHN
Sbjct: 211 ENQGLLDSMDLSPKMKDEVRKLLNSKHLFFREMCAYHN 248



 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 56/85 (65%)

Query: 265 EMAAIFQDPAVSLWEKKEWIKKQKLQLLEQRVSIQSQAFELEKQRFKWLRYCSKKDREFE 324
           E++ +FQD   S WEKK+WI+ + +QL EQ++  +SQAF+LEKQR KW RY SKK+RE E
Sbjct: 395 EISGVFQDGGKSTWEKKQWIRNRIMQLEEQKIGYESQAFQLEKQRLKWARYSSKKEREME 454

Query: 325 TSXXXXXXXXXXXXQSILQLRQKQL 349
            +            + +L +R+K+L
Sbjct: 455 RAKLENERRRLENERMVLLIRKKEL 479