Jatropha Genome Database

JcCB0449991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0449991.10 + phase: 0 /partial
         (233 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g109440.1 Actin-binding, actinin-type; Cyclin-like F-...    87   1e-17

>IMGA|Medtr8g109440.1 Actin-binding, actinin-type; Cyclin-like F-box
           chr08_pseudomolecule_IMGAG_V3 24525967-24527544 H
           EGN_Mt090430 20090702
          Length = 447

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 103/237 (43%), Gaps = 20/237 (8%)

Query: 2   IRFDLDKTSANEIDNWLHFALSRRVQRLEFNFDSKVIPEVSRCYTLSMAHAGSSCIKSLT 61
           ++F     + ++IDNW+HFA+ ++VQ+LE  F   ++      Y L +         SL 
Sbjct: 125 LKFWFPMKNVSDIDNWIHFAVQKKVQKLELYFGHTIV------YVLPLHIFKVERFNSLC 178

Query: 62  SVSLTNVDVTAEVLEHFLSNCPNXXXXXXXXXXXXXXXKVAGPSPFRLKHLEIQYCQDFG 121
            + + ++ VT E+LE+ + NC                 KV+G S  +LK LE+  C +  
Sbjct: 179 VLRMKSITVTDEMLEYLMCNCQLLETLSLVDSRVPKTMKVSG-SSLKLKCLELVRCWELT 237

Query: 122 QLEICAPNLVYFGYLGRKMRLHIVHAPSLIHVYLSYYCLDSPTFVXXXXXXXXXXXXXXX 181
           ++EI A  LV F Y G  +       P L             +FV               
Sbjct: 238 KIEIFAEKLVSFKYYGSHLETEFKSVPCLEEASF------GGSFVEFVRESFLPQIKVLK 291

Query: 182 XDFS-----TILQMPNIPELTNLKHLVIGGCADSHDSLLWIDPLLKACPSLQKLSLR 233
            D +      I  +  +P+L NLKHL +  CAD  D +     LLKA PSL +L ++
Sbjct: 292 LDITQNSPEVIYWLSQLPKLKNLKHLELVACAD--DGISACVMLLKASPSLWRLKIK 346