Jatropha Genome Database
- JcCB0449291.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0449291.10 - phase: 2 /TE/pseudo/partial
(477 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse transc... 190 2e-48
IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse transc... 187 1e-47
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 181 1e-45
IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse transc... 152 5e-37
IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse transc... 145 3e-35
IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse transc... 142 4e-34
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc... 131 7e-31
IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse transc... 121 8e-28
IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse transc... 102 3e-22
IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse transc... 102 3e-22
IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse transcri... 97 2e-20
IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse transc... 97 2e-20
IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse transc... 92 8e-19
IMGA|AC235669_13.1 RNA-directed DNA polymerase (Reverse transcri... 88 8e-18
IMGA|AC233668_29.1 RNA-directed DNA polymerase (reverse transcri... 79 4e-15
IMGA|Medtr7g068060.1 RNA-directed DNA polymerase (Reverse transc... 74 1e-13
IMGA|Medtr2g049290.1 RNA-directed DNA polymerase (Reverse transc... 74 1e-13
IMGA|AC233676_33.1 RNA-directed DNA polymerase (reverse transcri... 72 9e-13
IMGA|AC233668_7.1 RNA-directed DNA polymerase (Reverse transcrip... 70 2e-12
IMGA|Medtr2g122180.1 RNA-directed DNA polymerase (reverse transc... 69 4e-12
IMGA|Medtr5g030050.1 RNA-directed DNA polymerase (Reverse transc... 68 1e-11
IMGA|Medtr4g013050.1 hypothetical protein chr04_pseudomolecule_I... 66 3e-11
IMGA|Medtr4g012970.1 hypothetical protein chr04_pseudomolecule_I... 66 3e-11
IMGA|Medtr3g010370.1 RNA-directed DNA polymerase (reverse transc... 66 3e-11
IMGA|Medtr4g159480.1 Endonuclease/exonuclease/phosphatase chr04_... 66 4e-11
IMGA|Medtr4g109120.1 RNA-directed DNA polymerase (Reverse transc... 64 1e-10
IMGA|Medtr3g097870.1 RNA-directed DNA polymerase (Reverse transc... 64 2e-10
IMGA|AC233685_57.1 RNA-directed DNA polymerase (Reverse transcri... 60 3e-09
IMGA|Medtr3g097880.1 RNA-directed DNA polymerase (reverse transc... 60 3e-09
IMGA|Medtr6g061920.1 RNA-directed DNA polymerase (Reverse transc... 60 3e-09
IMGA|AC233572_22.1 RNA-directed DNA polymerase (Reverse transcri... 60 3e-09
IMGA|Medtr5g013050.1 RNA-directed DNA polymerase (reverse transc... 58 1e-08
IMGA|Medtr3g039900.1 RNA-directed DNA polymerase (Reverse transc... 57 2e-08
IMGA|Medtr2g085670.1 Endonuclease/exonuclease/phosphatase chr02_... 54 2e-07
IMGA|Medtr5g037770.1 RNA-directed DNA polymerase (Reverse transc... 54 2e-07
IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse transc... 53 4e-07
IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse transc... 51 1e-06
IMGA|CU179634_33.1 RNA-directed DNA polymerase (Reverse transcri... 51 2e-06
IMGA|Medtr3g025270.1 RNA-directed DNA polymerase (reverse transc... 50 2e-06
IMGA|AC233668_8.1 RNA-directed DNA polymerase (reverse transcrip... 50 3e-06
IMGA|Medtr2g032730.1 RNA-directed DNA polymerase (reverse transc... 49 7e-06
>IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
34193929-34195112 H EGN_Mt090430 20090702
Length = 373
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 141/228 (61%), Gaps = 3/228 (1%)
Query: 252 RCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGN-NDTSIILIPMKGNPKLVY 310
+C GPDG N GFYQ F + D+ ++L LP + N T+I LIP + +
Sbjct: 59 KCPGPDGFNPGFYQHFWQLCSPDIFRECCSWLESG-QLPASLNSTNIALIPKGSEQRTMK 117
Query: 311 DLCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKR 370
D P +LC+V K+VSKV+ANR+K L I D QSAFVPGR I+D M+A E+++++K
Sbjct: 118 DWRPIALCDVFYKVVSKVLANRLKKILHKCILDNQSAFVPGRPILDNAMVAIEVVHYMKS 177
Query: 371 KTQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQ 430
KT+G+ VALK D+SKAYD ++ L+L+ ++ K+GFC W Y +L + +
Sbjct: 178 KTKGKKGNVALKLDISKAYDRIDWLYLKEVMIKMGFCHRWVNWIMMCIETVDYSVLVNQK 237
Query: 431 CYG-PIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
G PIIP R L+ GDP+ PYLFI+CV LS+L+ + E+ G HG KV
Sbjct: 238 LVGPPIIPGRGLQQGDPLSPYLFILCVEGLSALIRQAEARGELHGAKV 285
>IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
29296065-29298854 H EGN_Mt090430 20090702
Length = 693
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 138/226 (61%)
Query: 252 RCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVYD 311
+C GPDG N GF+Q F + D+ S ++LN+N P N T+I LIP + D
Sbjct: 8 KCLGPDGFNPGFFQKFWSVCNSDIFSECCSWLNNNQFPPSLNSTNIALIPKGNEQHNMKD 67
Query: 312 LCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRK 371
P +LCNV+ K+V+KV+ANR+K+ L +SD QSAFVPGR+I+D MIA E+++H+K
Sbjct: 68 WRPIALCNVLYKLVAKVLANRLKNILHKCVSDNQSAFVPGRSILDNAMIAIEVIHHMKIS 127
Query: 372 TQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQC 431
+ R + VALK D+SKAYD ++ L+L+ ++ K+G+ W Y ++ + +
Sbjct: 128 KRLRDKNVALKLDISKAYDRIDWLYLKEVVIKIGYANRWIRWIMMCVESVDYSVIVNNES 187
Query: 432 YGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
GPI P LR GDP+ PYLFI+C LS+L+ + E G HG +
Sbjct: 188 VGPIFPGEGLRQGDPLSPYLFILCAEGLSALIHQAERRGDIHGISI 233
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 138/227 (60%), Gaps = 2/227 (0%)
Query: 252 RCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGN-NDTSIILIPMKGNPKLVY 310
+ GPDG+N FY+ F + GE++ +A +L H NLP DT+I+LIP +P+ +
Sbjct: 265 KAPGPDGLNPTFYKRFWTLCGEEVVAACRRWL-HEGNLPTALGDTNIVLIPKCDHPRTMR 323
Query: 311 DLCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKR 370
DL P SLCNVV KI++K +ANR++ L IS QS FV GR I D ++IA EI+++LK
Sbjct: 324 DLRPISLCNVVYKILAKTLANRLQRVLDKCISVEQSGFVAGRTITDNILIALEIIHYLKC 383
Query: 371 KTQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQ 430
KT G E ALK D+SK YD V+ +L +++ K+GF W YH+L +
Sbjct: 384 KTWGIKGEAALKIDISKTYDRVDWNYLFSIMEKMGFNPIWIKWMRMSVTMVSYHVLVNDD 443
Query: 431 CYGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
GPI P R LR GDP+ PYLFI+C +S+L+ + E + HG KV
Sbjct: 444 RVGPIYPGRGLRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKV 490
>IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
1329629-1330366 H EGN_Mt090430 20090702
Length = 245
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 122/227 (53%), Gaps = 9/227 (3%)
Query: 251 MRCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVY 310
+ GPDG+ FY + ++G T A L LN+N + N T+I LIP K NP
Sbjct: 4 LAAPGPDGLPALFYHHYWDVLG---TEAALDVLNNNADPSPFNSTNICLIPKKNNPSHPS 60
Query: 311 DLCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKR 370
D P +L KI++K +ANR+K L VIS QSAF+PGR I D +++YEI ++L
Sbjct: 61 DFWPIAL-----KIITKTIANRLKPILGEVISGNQSAFLPGRLISDNTLMSYEIFHYLSN 115
Query: 371 KTQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQ 430
T + + +KT M+KAYD VE FL+ + K+GF + + IL DG
Sbjct: 116 -TSSKKGYMGMKTVMAKAYDKVEWTFLEATMLKMGFPHQFVSTIMRCVTTVTFSILIDGS 174
Query: 431 CYGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
P R LR GDP+ PYLFIICV S L+ K + L HG K+
Sbjct: 175 NSKEFQPQRGLRQGDPLSPYLFIICVDVFSELINKANNNKLIHGVKI 221
>IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr01_pseudomolecule_IMGAG_V3
5513052-5515983 E EGN_Mt090430 20090702
Length = 591
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 26/226 (11%)
Query: 252 RCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVYD 311
+ PDG N FYQ F H+ G+D+ A +++L+ T+I LI +P + D
Sbjct: 27 KSPSPDGFNPAFYQRFWHVCGDDIFQAVVSWLDRGYFPTNLTKTNICLILKCEDPDNMKD 86
Query: 312 LCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRK 371
L P SLCNV+ K+VSK++ANR+K CL +S+ QSAFV GR+I+D +I EI++ +KRK
Sbjct: 87 LRPISLCNVLYKMVSKLLANRLKRCLDKCVSEEQSAFVEGRSILDNALITTEIIHSMKRK 146
Query: 372 TQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQC 431
T+G E+ALK D++KAYD V FL+ +L ++GF W
Sbjct: 147 TKGWRGELALKIDINKAYDKVGWGFLRGVLMRMGFNEKWIQWM----------------- 189
Query: 432 YGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
+ GDP+ PYLFI+ LS+L+ K + G HG +V
Sbjct: 190 ---------MMCGDPLSPYLFILVDEGLSTLIHKAVNRGDIHGIQV 226
>IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
40247310-40247920 H EGN_Mt090430 20090702
Length = 187
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 104/167 (62%)
Query: 311 DLCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKR 370
DL P SLCNV+ K+V K++ NR+K CL + + QS F R+I+D +IA EI++ +KR
Sbjct: 3 DLRPISLCNVLYKMVLKLLTNRLKRCLDKCVLEEQSTFFKSRSILDNALIATEIIHSMKR 62
Query: 371 KTQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQ 430
KT+G E+ALK D+SKAYD V+ FL+ +L ++GF W Y +L +
Sbjct: 63 KTKGWRGELALKIDISKAYDRVDWGFLRGVLMRMGFSEKWIQWMMMCVSSVTYSVLTNFD 122
Query: 431 CYGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
GPI+P R LR GDP+ PYLFI+ LS+L+ K ++G HG +V
Sbjct: 123 RVGPIVPGRGLRQGDPLSPYLFILVAEGLSTLIHKIVNSGDIHGVQV 169
>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
15868030-15871357 E EGN_Mt090430 20090702
Length = 845
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 102/173 (58%), Gaps = 12/173 (6%)
Query: 305 NPKLVYDLCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEI 364
NP L P +LCNV+ K+V+KV+ANR+K L IS+ QSAFVP R+I+D MIA E+
Sbjct: 184 NPGFFQQLWPIALCNVLYKLVAKVLANRLKKILHKCISESQSAFVPERSILDNAMIAIEV 243
Query: 365 MYHLKRKTQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYH 424
++H+K + R + VALK D+SKAYD ++ L+L+ ++ K+GF W Y
Sbjct: 244 VHHMKVGKRVRDKNVALKLDISKAYDRIDWLYLKEVMLKMGFDSKWVQQIMMCVETVDYS 303
Query: 425 ILHDGQCYGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
++ + + GDP+ PYLFI+C LS+L+ K E +G HG +
Sbjct: 304 VIVNNEL------------GDPLSPYLFILCDEGLSALIRKAERSGDLHGVSI 344
>IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
11971058-11973594 E EGN_Mt090430 20090702
Length = 628
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 16/212 (7%)
Query: 252 RCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVYD 311
+ GPDG GFYQ I+G++ L N T+I LIP +P+ V
Sbjct: 251 KAPGPDGFPAGFYQKSWSIIGKNTCDFIKKLWCSPEQLAEINSTNICLIPKVQDPQFVNQ 310
Query: 312 LCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRK 371
P SLCN V KI+SKV+ NR+K+C++ ++S Q+ F+PGR+I + +++A E+++ R+
Sbjct: 311 FRPISLCNTVYKILSKVIVNRLKNCVAEIVSPFQTGFIPGRSIHENIVVAQEMIHCGSRQ 370
Query: 372 TQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQC 431
T YD++ F+ L ++G M+ ++ +G
Sbjct: 371 T----------------YDNLSWNFIHMTLLEVGLPMEMINVIMHSVTTVRTNVRWNGNR 414
Query: 432 YGPIIPSRDLRHGDPILPYLFIICVXALSSLL 463
P + LR GDPI PYLF+IC+ LS L+
Sbjct: 415 ADFFTPKKGLRQGDPISPYLFVICMDKLSHLI 446
>IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13557404-13554904 H EGN_Mt090430 20090702
Length = 447
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%)
Query: 337 LSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRKTQGRVREVALKTDMSKAYDHVEXLF 396
L V D S F+PGR I+D MIA E++YH+K + R + V LK D+SKAYD ++ L+
Sbjct: 61 LCQVAKDNPSDFIPGRLILDNAMIAIEVIYHMKISKRMRDKNVTLKLDISKAYDRIDWLY 120
Query: 397 LQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQCYGPIIPSRDLRHGDPILPYLFIIC 455
L+ ++ K+GF W Y ++ + + GPI P R R GDP+ YLFI+C
Sbjct: 121 LKQIMVKMGFVTHWIRWIMMCVEIVDYFVIVNNESVGPIFPGRGFRQGDPLSLYLFILC 179
>IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13373662-13371162 H EGN_Mt090430 20090702
Length = 447
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%)
Query: 337 LSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRKTQGRVREVALKTDMSKAYDHVEXLF 396
L V D S F+PGR I+D MIA E++YH+K + R + V LK D+SKAYD ++ L+
Sbjct: 61 LCQVAKDNPSDFIPGRLILDNAMIAIEVIYHMKISKRMRDKNVTLKLDISKAYDRIDWLY 120
Query: 397 LQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQCYGPIIPSRDLRHGDPILPYLFIIC 455
L+ ++ K+GF W Y ++ + + GPI P R R GDP+ YLFI+C
Sbjct: 121 LKQIMVKMGFVTHWIRWIMMCVEIVDYFVIVNNESVGPIFPGRGFRQGDPLSLYLFILC 179
>IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse
transcriptase); Endonuclease/exonuclease/phosphatase
AC233655.2 202219-200303 H EGN_Mt090430 20090702
Length = 567
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 98/226 (43%), Gaps = 54/226 (23%)
Query: 252 RCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVYD 311
+ G DG+N FY+ F + G ++ A +LN +T+I+LIP +P+ + D
Sbjct: 380 KAPGSDGLNPAFYKRFSALCGGEVIKACKQWLNLGYLPTALGETNIVLIPKCEHPRTMKD 439
Query: 312 LCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRK 371
L P SLCNVV K+++K
Sbjct: 440 LRPISLCNVVYKMLAK-------------------------------------------- 455
Query: 372 TQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQC 431
AL + +A D E LF ++L K+GF W YHIL + +
Sbjct: 456 --------ALANRLQRALDKFEYLF--SILEKMGFNSVWINWMHMCVTNVKYHILVNDEI 505
Query: 432 YGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
GP+IP R LR GDP+ PYLFI+C ++SL+ + E + HG KV
Sbjct: 506 VGPVIPGRGLRQGDPLSPYLFILCAGGMTSLIKQAERNNILHGIKV 551
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 16/171 (9%)
Query: 40 FHFVGFYRQPNRSRCHESXRLLETLRSKSALPLVAAGDFNELLDMSEKRGV--------- 90
+ GFY P R + ES +L TL +S LP GDFN++ +KR V
Sbjct: 52 WRLTGFYGIPQRGQSRESWNILTTLSQQSNLPWCIVGDFNDIHTNEDKRVVECGLIDIPL 111
Query: 91 YGHPLWLIRNFXTVIDKCELLDLGYVGGYILGNEVXYSXVGVXNLETTASDHIPVFVNLG 150
GH R T E LD V + + + NL + ASDH P+ +N
Sbjct: 112 QGHAYTWSRRMGTSYVVEERLDRALVTHEWMSM---FPQCILHNLISGASDHSPILLNTD 168
Query: 151 INIIRYARKAFWFENSWLKEVDVEEVVRKGWSKGDGRPLQDLDEKRIXLCS 201
+ Y R+ F FEN+WL E ++ +V GW +G PL D R+ LC+
Sbjct: 169 PKVYEYKRRQFRFENAWLVEPELPSIVSDGWMRGQADPLLD----RLALCT 215
>IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
26299553-26300277 H EGN_Mt090430 20090702
Length = 207
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 34/167 (20%)
Query: 311 DLCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKR 370
DL SLCNV+ K+ K QSAFV +I+D +IA EI++ +KR
Sbjct: 3 DLRLISLCNVLYKMFRKE----------------QSAFVEDHSILDNTLIATEIIHSVKR 46
Query: 371 KTQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQ 430
KT G E+ALK D+SKAYD V+ +L+ +L ++GF +L +
Sbjct: 47 KTNGWRGELALKIDISKAYDRVDGGYLRGVLMRMGF------------------MLMNFD 88
Query: 431 CYGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
GPI+P R LR DP+ PYLFI+ LS+L+ K + G HG +V
Sbjct: 89 RVGPIVPGRGLRQADPLSPYLFILVAEGLSTLIHKAVNRGGIHGVQV 135
>IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13555953-13554878 H EGN_Mt090430 20090702
Length = 318
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 20/227 (8%)
Query: 252 RCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLP-GNNDTSIILIPMKGNPKLVY 310
+ GPDG+N+GF + F + +D+ +L+ + N L G N+T I LIP P+ +
Sbjct: 108 KSPGPDGVNMGFVKDFWPELRDDIMH-FLSDFHRNGKLSKGINNTFIALIPKIECPQRLN 166
Query: 311 DLCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKR 370
D P S+ + KI+SKV++NR++ + I+D ++IA EI+ KR
Sbjct: 167 DFRPISMVGSLYKILSKVLSNRLRRVIQ---------------ILDGILIANEIVKDAKR 211
Query: 371 KTQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQ 430
+ + K D KA+D + +L+ ++ K+ + W +L +G
Sbjct: 212 LKKDL---LLFKVDFEKAFDSINWSYLEAVMKKMNYPTLWRKWIMECVSTASTSVLVNGS 268
Query: 431 CYGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
R LR GDP P+LF+I L+ ++ AGLF G K+
Sbjct: 269 PTDEFKLERGLRQGDPFSPFLFLIAAEGLNVMMKALIEAGLFSGYKL 315
>IMGA|AC235669_13.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC235669.1 69436-68759 H EGN_Mt090430
20090702
Length = 225
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 252 RCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVYD 311
+ GPDG F++ F +G+D+ N T I LIP K NP+ + +
Sbjct: 32 KAPGPDGFQPIFFKHFWERIGDDIRRLVHTTFNMGSINASIAKTLIFLIPKKSNPQRLKN 91
Query: 312 LCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRK 371
P S CNV+ K+++K + +R++ L ++IS QS+F+PGR I D ++A E++ H
Sbjct: 92 FRPISFCNVIFKLITKFLVSRLRPLLVDMISPLQSSFIPGRGITDNAILAQEVV-HFIHH 150
Query: 372 TQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGF 406
+ + + K D KAYD FL+ L GF
Sbjct: 151 SHAKKGCIVSKIDHEKAYDRHNWDFLELTLHGFGF 185
>IMGA|AC233668_29.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC233668.2 112870-111301 H
EGN_Mt090430 20090702
Length = 281
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 61/94 (64%)
Query: 294 DTSIILIPMKGNPKLVYDLCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRA 353
+T+I+LIP K NP+ +DL P SL + KI+SKV+ NR++ L IS FV +
Sbjct: 184 ETNIVLIPKKDNPETTWDLHPISLGKFLYKIISKVLGNRLERLLPKCISQEHLTFVENIS 243
Query: 354 IMDTVMIAYEIMYHLKRKTQGRVREVALKTDMSK 387
I+D V++A +I++H+K K++G+ E A K D SK
Sbjct: 244 ILDNVLVASKILHHMKCKSKGKKGEAASKIDTSK 277
>IMGA|Medtr7g068060.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
13863857-13863375 E EGN_Mt090430 20090702
Length = 116
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%)
Query: 385 MSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQCYGPIIPSRDLRHG 444
MSKAYD + +L+ ++ +LGF W Y +L + + GPI+P LR G
Sbjct: 1 MSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSGLRKG 60
Query: 445 DPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
DP+ PYLFI+C L+SL+ K E G HG +V
Sbjct: 61 DPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRV 93
>IMGA|Medtr2g049290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
13465118-13466957 H EGN_Mt090430 20090702
Length = 509
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%)
Query: 255 GPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVYDLCP 314
GPDG + FY F HI+G D+ + F +N +P N +ILIP + + P
Sbjct: 165 GPDGFSGHFYHCFWHIIGGDVVKSTQHFFLNNYIMPNLNSNLLILIPKVIGADTLDNFRP 224
Query: 315 SSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEI 364
+L N KI++K++ +R+ + +IS Q F+PGR+I + +M+A E+
Sbjct: 225 IALANFQFKIITKILGDRLGIIAAKIISTHQRGFIPGRSIQECIMVASEV 274
>IMGA|AC233676_33.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC233676.2 127681-128151 H
EGN_Mt090430 20090702
Length = 156
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%)
Query: 249 SKMRCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKL 308
+ + PDG+NL F + F + +D F + G N+T I LIP + +
Sbjct: 27 DRYKIPRPDGINLSFIKDFWPKLQDDFMRFISEFHRNGKLSRGINNTFIALIPKVESSQR 86
Query: 309 VYDLCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHL 368
+ D P S+ + K++SKV+ NR+ + +IS+ QSAF+ GR I+D ++IA E++
Sbjct: 87 LNDFRPISMVESLYKVISKVITNRLCQDMPGIISEMQSAFIHGRQILDEILIANELVEEA 146
Query: 369 KR 370
KR
Sbjct: 147 KR 148
>IMGA|AC233668_7.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233668.2 19636-19893 H EGN_Mt090430
20090702
Length = 85
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 53/78 (67%)
Query: 316 SLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRKTQGR 375
+L NV+ K+V+KV+ANR+K L IS+ QSAF R+I+D MI+ E ++H+K + R
Sbjct: 8 ALWNVLYKLVAKVLANRLKKILHKCISEYQSAFASERSILDNAMISIEAIHHMKVSKKVR 67
Query: 376 VREVALKTDMSKAYDHVE 393
+ VALK D+SK D ++
Sbjct: 68 DKNVALKLDISKVCDRID 85
>IMGA|Medtr2g122180.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
29251624-29251866 H EGN_Mt090430 20090702
Length = 80
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 50/70 (71%)
Query: 316 SLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRKTQGR 375
SLCN++ K+VS ++ANR+K CL +S QS+F+ GR+I+D +IA +I + +KRKT+G
Sbjct: 8 SLCNILYKMVSNLLANRLKHCLDKCVSGEQSSFIEGRSILDNTLIATKITHSMKRKTKGW 67
Query: 376 VREVALKTDM 385
E+ L D+
Sbjct: 68 RGELTLDIDL 77
>IMGA|Medtr5g030050.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
12585358-12584747 H EGN_Mt090430 20090702
Length = 203
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 359 MIAYEIMYHLKRKTQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXX 418
MI E+++H+K + R + VALK + K Y ++ L+L+ ++ KL F W
Sbjct: 1 MIVIEVVHHMKISKRSRDKNVALKLYIGKGYVCIDRLYLKEVMQKLEFANRWVRWIMMCV 60
Query: 419 XXXXYHILHDGQCYGPIIPSRDLRHGDPILPYLFIIC 455
Y ++ + + GPI R LR GDP+ PYLFI+C
Sbjct: 61 ETDDYSVIVNNESVGPIFLGRGLRQGDPLSPYLFILC 97
>IMGA|Medtr4g013050.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 2458849-2459642 H
EGN_Mt090430 20090702
Length = 155
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 19/115 (16%)
Query: 348 FVPGRAIMDTVMIAYEIMYHLKRKTQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFC 407
F+ R+I+D MI +E+++H+K T+ LK D++KAY+ ++ ++L+ ++ K+G
Sbjct: 2 FISKRSILDNAMIPFEVVHHMKIDTRMSNNIATLKLDINKAYNQIDWVYLKKVMLKMGLS 61
Query: 408 MDWXXXXXXXXXXXXYHILHDGQCYGPIIPSRDLRHGDPILPYLFIICVXALSSL 462
GPII R L DP+ PYL+I+C S+L
Sbjct: 62 -------------------QSCNLVGPIILGRGLCQSDPLFPYLYILCAEGFSAL 97
>IMGA|Medtr4g012970.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 2420499-2421292 H
EGN_Mt090430 20090702
Length = 155
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 19/115 (16%)
Query: 348 FVPGRAIMDTVMIAYEIMYHLKRKTQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFC 407
F+ R+I+D MI +E+++H+K T+ LK D++KAY+ ++ ++L+ ++ K+G
Sbjct: 2 FISKRSILDNAMIPFEVVHHMKIDTRMSNNIATLKLDINKAYNQIDWVYLKKVMLKMGLS 61
Query: 408 MDWXXXXXXXXXXXXYHILHDGQCYGPIIPSRDLRHGDPILPYLFIICVXALSSL 462
GPII R L DP+ PYL+I+C S+L
Sbjct: 62 -------------------QSCNLVGPIILGRGLCQSDPLFPYLYILCAEGFSAL 97
>IMGA|Medtr3g010370.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
1763115-1762355 H EGN_Mt090430 20090702
Length = 169
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 254 SGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGN-NDTSIILIPMKGNPKLVYDL 312
+ PDG+ F +G D+ + LN N+ P N N T I L P + +PKL D
Sbjct: 5 ATPDGLTTLFINLKGETIGPDIINYVFTVLN-NMGGPCNINYTFICLFPKENDPKLPSDY 63
Query: 313 CPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLK 369
L VV KIV+K +AN++ + L N IS QSAF+ R I D + AY+ ++LK
Sbjct: 64 RSIFLSIVVVKIVTKTIANKINTILPNFISLQQSAFLHNRLIFDNTLFAYQAFHYLK 120
>IMGA|Medtr4g159480.1 Endonuclease/exonuclease/phosphatase
chr04_pseudomolecule_IMGAG_V3 40245955-40247247 H
EGN_Mt090430 20090702
Length = 395
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 18/199 (9%)
Query: 3 GHGGGLALMWKERPMVSLFSSSQSHIDVKVTVXSIPQFHFVGFYRQPNRSRCHESXRLLE 62
G GL + WK+ L + S++ I++ V + +Y P R+R ++ LL
Sbjct: 20 GRSRGLTVFWKDDSNCVL-NYSRNFINLIVEDREAGDWRLTCYYGFPERARRRDAWDLLR 78
Query: 63 TLRSKSALPLVAAGDFNELLDMSEKRGVY----------GHPLWLIRNFXTVIDKCELLD 112
LR +L GDFN+LL +K V GHP I++ T E LD
Sbjct: 79 ELRDMKSLSWCIIGDFNDLLSQQDKAAVDDCALSDIKLDGHPFTWIKSPGTNRVLEERLD 138
Query: 113 LGYVGGYILGNEVXYSXVGVXNLETTASDHIPVFVNLGINIIRYARKAFWFENSWLKEVD 172
+ L + V + NL T+ SDH P+ +++ ++ + +F FENSWL
Sbjct: 139 MAMGNPEWLQR---FPEVKLTNLLTSHSDHTPILLDIVPSVRQMHNYSFKFENSWL---- 191
Query: 173 VEEVVRKGWSKGDGRPLQD 191
+EEVV GW G L D
Sbjct: 192 LEEVVVDGWGGTTGLELGD 210
>IMGA|Medtr4g109120.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
24335493-24334934 H EGN_Mt090430 20090702
Length = 100
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 51/87 (58%)
Query: 275 MTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVYDLCPSSLCNVVDKIVSKVVANRMK 334
M+ ++LN N N T+I+LIP K + P SLCNV+ K+++KV+ANR+K
Sbjct: 13 MSQECCSWLNDNQIFSSLNATNIVLIPKGREQKTMKYWRPISLCNVLHKLLTKVLANRLK 72
Query: 335 SCLSNVISDCQSAFVPGRAIMDTVMIA 361
L +S QS FV R+I+D MIA
Sbjct: 73 LVLRKCVSYNQSTFVSSRSILDNAMIA 99
>IMGA|Medtr3g097870.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
23554745-23554236 H EGN_Mt090430 20090702
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 423 YHILHDGQCYGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
Y +L +G+ GPI P R LR GDP+ PYLFI+C LS+LL + E+ G HG KV
Sbjct: 10 YQVLVNGESVGPINPKRGLRQGDPLSPYLFILCAEGLSALLRRAETRGDIHGVKV 64
>IMGA|AC233685_57.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233685.2 242381-241350 H EGN_Mt090430
20090702
Length = 268
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 423 YHILHDGQCYGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
Y ++ +G+ PIIP R LR GDP+ PYLFIICV LS+ L K E+ HG K+
Sbjct: 23 YQVIVNGERVRPIIPKRGLRQGDPLSPYLFIICVEGLSAQLKKAEARVDIHGVKL 77
>IMGA|Medtr3g097880.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
23554988-23554803 H EGN_Mt090430 20090702
Length = 61
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 347 AFVPGRAIMDTVMIAYEIMYHLKRKTQGRVREVALKTDMSKAYDHVE 393
AFV R+I+D V+ A+E+++H+K K +G+V EVALK D+SKAYD VE
Sbjct: 15 AFVENRSIIDNVIAAHEVIHHMKCKRKGKVGEVALKIDISKAYDRVE 61
>IMGA|Medtr6g061920.1 RNA-directed DNA polymerase (Reverse
transcriptase); Deoxyribonuclease I
chr06_pseudomolecule_IMGAG_V3 11215607-11213885 H
EGN_Mt090430 20090702
Length = 405
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 28/159 (17%)
Query: 252 RCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVYD 311
+ G +G++L F + F ++ DM + F H+ G N T I LIP
Sbjct: 248 KSPGANGISLNFIKDFWGLLKGDMIRFFNDFHRHDRLSKGINSTFIALIP---------- 297
Query: 312 LCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRK 371
KV+ NR+++ + +VIS Q+ FV G I+D ++IA E++ ++
Sbjct: 298 ---------------KVLVNRLQNIIGSVISPSQTTFVSGCQILDGLLIANELVDDACKR 342
Query: 372 TQGRVREVALKTDMSKAYDHVEXLFLQNMLFKLGFCMDW 410
Q + K D KA+D V+ +L ML ++ F W
Sbjct: 343 KQDL---LLFKVDFEKAFDSVDWKYLHTMLRRMNFPRLW 378
>IMGA|AC233572_22.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233572.2 97249-98280 H EGN_Mt090430
20090702
Length = 258
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 423 YHILHDGQCYGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
Y ++ +G+ PIIP R LR GDP+ PYLFIICV LS+ L K E+ HG K+
Sbjct: 23 YQVIVNGERVRPIIPKRGLRQGDPLSPYLFIICVEGLSAQLKKAEARVDIHGVKL 77
>IMGA|Medtr5g013050.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
3891819-3892634 H EGN_Mt090430 20090702
Length = 213
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%)
Query: 330 ANRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRKTQGRVREVALKTDMSKAY 389
+NR++ + IS + FV R+IM+ + A+EI++ + K +G++ +V LK D+ K +
Sbjct: 11 SNRLRPLIRKYISLEHTTFVTSRSIMNNALSAFEILHFMCCKHKGKIGDVVLKLDIPKTF 70
Query: 390 DHVEXLFLQNMLFKLGFCMDW 410
D V +LQ+++ + FC W
Sbjct: 71 DTVNWSYLQDVVIIMDFCTRW 91
>IMGA|Medtr3g039900.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
10722310-10721876 H EGN_Mt090430 20090702
Length = 126
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%)
Query: 252 RCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVYD 311
+ G G+N GF + F E+ T F + G N T I LI N + V D
Sbjct: 17 KSPGLGGINFGFIKDFWPDFQEEFTCFITEFHGNGKLSKGINITFITLIRKIDNSQRVND 76
Query: 312 LCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMD 356
P SL + + K++SKV+ANR++ +VIS+ Q AF+ R I+D
Sbjct: 77 FRPISLVSNLYKVLSKVLANRLRCVTESVISETQLAFIHHRQILD 121
>IMGA|Medtr2g085670.1 Endonuclease/exonuclease/phosphatase
chr02_pseudomolecule_IMGAG_V3 19361131-19359840 H
EGN_Mt090430 20090702
Length = 402
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 1 YIGHG----GGLALMWKERPMVSLFSSSQSHIDVKVTVXS-IPQFHFVGFYRQPNRSRCH 55
Y G G GGL+L+WKE V + S S HID +++ ++ G Y P H
Sbjct: 60 YRGEGRNRAGGLSLLWKEGVEVEVLSFSLHHIDFLISLEEGEDKWRCFGIYGYPESHEKH 119
Query: 56 ESXRLLETLRS-KSALPLVAAGDFNELLDMSEKRGVYGHPLWLIRNFXTVIDKCELLDLG 114
++ L++ L + + V DFN +L EK +I F + L+DLG
Sbjct: 120 KTCELIDNLATINNTSKCVLFVDFNLILSRDEKEDCNFGNSSIISLFRDTLMNHGLVDLG 179
Query: 115 YVG------GYILGN----------------EVXYSXVGVXNLETTASDHIPVFVNLGIN 152
Y G Y GN Y V +L SDH+P+ + LG
Sbjct: 180 YEGDKFTCHNYQDGNANIKARLDRMVASHDWRFTYPTASVSHLTRYFSDHMPLLLRLGPR 239
Query: 153 IIRYAR---KAFWFENSWLKEVDVEEVVRKGWS 182
+ R K FE+ WL++ + + V++GW+
Sbjct: 240 KPKMRRQRIKVLHFEDWWLRDRHITDAVKEGWN 272
>IMGA|Medtr5g037770.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
15923468-15924026 H EGN_Mt090430 20090702
Length = 136
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 251 MRCSGPDGMNLGFYQAFXHIVGEDMTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVY 310
+R S D N+ F+ I ED+ +L N T+I LI V
Sbjct: 27 IRHSITDTNNVHFWS----ICSEDIFKDCCEWLELGQFPASLNTTNITLISKDNIHTTVK 82
Query: 311 DLCPSSLCNVVDKIVSKVVANRMKSCLSNVISDCQSAFVPGRAIMDTVM 359
D P +LCNV+ K++SKV+A+ +K L I D QS F+ GR+I+D M
Sbjct: 83 DWRPITLCNVLYKLISKVLADGLKGVLPKCIYDNQSTFLSGRSILDNAM 131
>IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3 86385-88912
E EGN_Mt090430 20090702
Length = 566
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 433 GPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
GPI+P R LR GDP+ PYLFI+ V LS+L+ K + G HG KV
Sbjct: 5 GPIVPGRGLRQGDPLSPYLFILVVEGLSTLIHKEVNRGDIHGVKV 49
>IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse
transcriptase); Histone H2B; Histone-fold;
Polynucleotidyl transferase, Ribonuclease H fold
chr01_pseudomolecule_IMGAG_V3 17931605-17934389 E
EGN_Mt090430 20090702
Length = 802
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 423 YHILHDGQCYGPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
+ +L G+ P R LR GDP+ PYLFI+C LS LL K + G FHG ++
Sbjct: 20 FSVLIIGKPSNKFYPQRGLRQGDPLSPYLFILCAEVLSGLLTKGLADGKFHGIQI 74
>IMGA|CU179634_33.1 RNA-directed DNA polymerase (Reverse
transcriptase) CU179634.6 121572-121327 H EGN_Mt090430
20090702
Length = 81
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 382 KTDMSKAYDHVEXLFLQNMLFKLGFCMDWXXXXXXXXXXXXYHILHDGQCYGPIIPSRDL 441
K D+ KAYDH+ FL ++ K+GF W + +L + + G R L
Sbjct: 3 KLDIQKAYDHLNWNFLLKLMEKMGFAFRWIKWIEHCISTVKFSVLINRETNGFFSSQRGL 62
Query: 442 RHGDPILPYLFII 454
R GDP+ P+LFI+
Sbjct: 63 RQGDPLSPFLFIM 75
>IMGA|Medtr3g025270.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
6508962-6510031 H EGN_Mt090430 20090702
Length = 291
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 275 MTSAYLAFLNHNLNLPGNNDTSIILIPMKGNPKLVYDLCPSSLCNVVDKIVSKVVANRMK 334
+ +Y FL + G N + +P+ V D P S + KI++ V+ANR++
Sbjct: 140 VEKSYFQFL---CGMEGGNLVRPFSVEEVDSPQCVNDFRPISFVGCMYKILANVLANRLR 196
Query: 335 SCLSNVISDCQSAFVPGRAIMDTVMIAYE 363
+ + VI D QSAF G+ I+D ++IA E
Sbjct: 197 TVIGTVIFDSQSAFDRGKQILDGIIIANE 225
>IMGA|AC233668_8.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC233668.2 19990-20214 H
EGN_Mt090430 20090702
Length = 74
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 433 GPIIPSRDLRHGDPILPYLFIICVXALSSLLVKFESAGLFHGCKV 477
G IIP R LR GDP+ PYLFI+C LS+L+ K E G G +
Sbjct: 3 GLIIPGRGLRQGDPLSPYLFILCAEGLSTLIDKDERCGDLRGISI 47
>IMGA|Medtr2g032730.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
8736183-8736016 H EGN_Mt090430 20090702
Length = 55
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 341 ISDCQSAFVPGRAIMDTVMIAYEIMYHLKRKTQGRVREVALKTDMSKAY 389
I D S +V G ++D VMIA E+++H+K +G+ + VALK D+ KAY
Sbjct: 3 IFDNHSVYVHGHLVLDNVMIAIEVVHHMKVSKRGKGKNVALKLDIRKAY 51