Jatropha Genome Database

JcCB0449231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0449231.10 + phase: 1 /partial
         (156 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g104400.1 Biotin and thiamin synthesis associated chr...   215   7e-57

>IMGA|Medtr4g104400.1 Biotin and thiamin synthesis associated
           chr04_pseudomolecule_IMGAG_V3 22768987-22763639 F
           EGN_Mt090430 20090702
          Length = 377

 Score =  215 bits (547), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 103/128 (80%), Positives = 112/128 (87%), Gaps = 2/128 (1%)

Query: 28  MSVQPTHPESVPINALVSVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF 87
           +S  PTHPESVPINAL++VKGTPLQDQKPVEIWEMIRMIATARI MPKAMVRLSAGRVRF
Sbjct: 251 LSTLPTHPESVPINALIAVKGTPLQDQKPVEIWEMIRMIATARITMPKAMVRLSAGRVRF 310

Query: 88  SMPEQALCFLAGANSIFTGEKLLTTPNNDFDVDQQMFKVLGLIPKAPSFSEDEEIAFESE 147
           S+PEQALCFLAGANSIF GEKLLTT NNDFD DQ MFKVLGL+PKAPS  +DE    E+E
Sbjct: 311 SVPEQALCFLAGANSIFAGEKLLTTANNDFDADQLMFKVLGLLPKAPSLDDDE--TNEAE 368

Query: 148 NCQAVSSS 155
           N +  +SS
Sbjct: 369 NYKEAASS 376