Jatropha Genome Database

JcCB0447941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0447941.10 - phase: 0 /partial
         (94 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g090150.1 Peptidase M20 chr04_pseudomolecule_IMGAG_V3...   108   8e-25

>IMGA|Medtr4g090150.1 Peptidase M20 chr04_pseudomolecule_IMGAG_V3
           18969309-18964409 E EGN_Mt090430 20090702
          Length = 563

 Score =  108 bits (269), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/64 (78%), Positives = 55/64 (85%)

Query: 2   VTVQESLKEKSIGITEESLLQLKYDPRSVWGYIEVHIEQGPVLEWAGFPLGVVKGIAGQT 61
           VTV++ LKE SI   EE  LQLKYDP+SVWGY+E+HIEQGPVLE  GFPLGVVKGIAGQT
Sbjct: 290 VTVKDVLKENSIEAAEEMFLQLKYDPKSVWGYVELHIEQGPVLEQVGFPLGVVKGIAGQT 349

Query: 62  RLKV 65
           RLKV
Sbjct: 350 RLKV 353