Jatropha Genome Database
- JcCB0437881.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0437881.10 - phase: 0 /TE
(583 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 398 e-111
IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H... 386 e-107
IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 173 2e-43
IMGA|Medtr5g105390.1 Polynucleotidyl transferase, Ribonuclease H... 139 5e-33
IMGA|AC135504_5.1 pol-polyprotein, putative AC135504.61 87442-87... 114 1e-25
IMGA|Medtr3g061730.1 Polynucleotidyl transferase, Ribonuclease H... 110 2e-24
IMGA|Medtr3g169280.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 91 1e-18
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 76 4e-14
IMGA|Medtr3g026360.1 Polynucleotidyl transferase, Ribonuclease H... 65 9e-11
IMGA|Medtr3g068370.1 Polynucleotidyl transferase, Ribonuclease H... 62 1e-09
IMGA|Medtr6g028320.1 Polynucleotidyl transferase, Ribonuclease H... 58 1e-08
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 56 4e-08
IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fo... 52 9e-07
IMGA|Medtr3g059120.1 gag-pol polyprotein, related chr03_pseudomo... 52 1e-06
IMGA|Medtr4g073750.1 Polynucleotidyl transferase, Ribonuclease H... 50 4e-06
IMGA|Medtr6g059710.1 GAG-POL precursor, putative chr06_pseudomol... 49 7e-06
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 49 8e-06
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/374 (51%), Positives = 265/374 (70%), Gaps = 2/374 (0%)
Query: 185 GGIRQDXSTDIETVSIRIFPYXGVLYKRSWNGLHLRCVDEGEAQTIMDSLHNGESGPHMH 244
G +QD T + ++ R +LYKR+++ + LRCVDE EA+ +M +H+G G H
Sbjct: 746 GASKQDKKT-LRRLASRFLLNGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHAT 804
Query: 245 GIALARKIVNLGYYWLTMNADCVRHAQKCHEYQIFAKLQRQPPVNLNPIASPWPFATWGI 304
G ++RK++ GYYW+ M DC ++A+KCH+ QI+A PP LN I+SPWPF+ WGI
Sbjct: 805 GHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGI 864
Query: 305 DVIGKIHPKASNGHQFILVAIDYFTKWIEAASYSVLNAKNAAQFVRTNILCQYGTPFEII 364
D+IG+I PKASNGH+FILVAIDYFTKW+EAASY+ + + A+F++ NI+C+YG P +II
Sbjct: 865 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVAKFIKNNIICRYGVPSKII 924
Query: 365 THNGFHFQSEFFD-LLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVILQKTVKKRKAWHE 423
T NG + + L ++ KI+HH SSPYRPQ NGAVEAANK IK I+QK V K WHE
Sbjct: 925 TDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKDWHE 984
Query: 424 QLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSARIIRESQISEADWAKNYHL 483
LP AL GYRT++R+ TGATP+SLVYGMEAVLP+E+E+ S R+I E+++SEA+W ++ +
Sbjct: 985 MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYD 1044
Query: 484 QLLGMDEKRLQAIHQTQVYQRRMARHFNKKVKDRKLEEGCLVLKEIRQPIIDPRGKFRPH 543
QL ++EKR+ A+ + Q YQ RM F+KKV R+ + G LVLK DPR K+ P+
Sbjct: 1045 QLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRVSQQPDPRDKWTPN 1104
Query: 544 WAGPYVLKKILSGG 557
+ GPYV+KK SGG
Sbjct: 1105 YEGPYVVKKAFSGG 1118
>IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H
fold chr06_pseudomolecule_IMGAG_V3 15275871-15277296 E
EGN_Mt090430 20090702
Length = 445
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/380 (51%), Positives = 262/380 (68%), Gaps = 18/380 (4%)
Query: 184 PGGIRQDXSTDIETVSIRIFPYXGVLYKRSWNGLHLRCVDEGEAQTIMDSLHNGESGPHM 243
PG +QD T + ++ R +LYKR+++ + LRCVDE EA+ +M +H+G G H
Sbjct: 59 PGASKQDKKT-LRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHA 117
Query: 244 HGIALARKIVNLGYYWLTMNADCVRHAQKCHEYQIFAKLQRQPPVNLNPIASPWPFATWG 303
G ++RK++ GYYW+TM DC ++A+KCH+ QI+A PP LN ++SPWPF+ WG
Sbjct: 118 TGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWG 177
Query: 304 IDVIGKIHPKASNGHQFILVAIDYFTKWIEAASYSVLNAKNAAQFVRTNILCQYGTPFEI 363
ID+IG+I PKASNGH+FILVAIDYFTKW F++ NI+C+YG P +I
Sbjct: 178 IDMIGRIEPKASNGHRFILVAIDYFTKW----------------FIKNNIICRYGVPSKI 221
Query: 364 ITHNGFHFQSEFFD-LLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVILQKTVKKRKAWH 422
IT NG + + L ++ KI+HH SSPYRPQ NGAVEAANK IK I+QK V K WH
Sbjct: 222 ITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKDWH 281
Query: 423 EQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSARIIRESQISEADWAKNYH 482
E LP AL GYRT++R+ TGATP+SLVYGMEAVLP+E+E+ S R+I E+++SEA+W ++ +
Sbjct: 282 EMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRY 341
Query: 483 LQLLGMDEKRLQAIHQTQVYQRRMARHFNKKVKDRKLEEGCLVLKEIRQPIIDPRGKFRP 542
QL ++EKR+ A+ + Q YQ RM F+KKV R+ + G LVLK DPRGK+ P
Sbjct: 342 DQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRVSQQPDPRGKWTP 401
Query: 543 HWAGPYVLKKILSGGAVILT 562
++ GPYV+KK SGGA+ILT
Sbjct: 402 NYEGPYVVKKAFSGGALILT 421
>IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
13291307-13288982 H EGN_Mt090430 20090702
Length = 695
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 166/308 (53%), Gaps = 25/308 (8%)
Query: 209 LYKRSWNGLHLRCVDEGEAQTIMDSLHNGESGPHMHGIALARKIVNLGYYWLTMNADCVR 268
L+ R ++ HL+C+ +A+ ++ + G G H+ G ALA K++ GYYW TM DC +
Sbjct: 371 LFIRGFSSPHLKCLAPQQAEYVIAEVDEGVCGTHIGGRALAAKVLRAGYYWPTMKEDCSK 430
Query: 269 HAQKCHEYQIFAKLQRQPPVNLNPIASPWPFATWGIDVIGKIHPKASNGHQFILVAIDYF 328
+ +KC + + SPWPF WG+D++G P A +F++VA+DYF
Sbjct: 431 YVKKC-----------------DKLISPWPFFKWGVDILGPF-PLAQGQLKFLIVAVDYF 472
Query: 329 TKWIEAASYSVLNAKNAAQFVRTNILCQYGTPFEIITHNGFHF-QSEFFDLLKQKKIQHH 387
TKWIE + + A +F I+C +G P ++T G + S + K+ I+ +
Sbjct: 473 TKWIEVELVATITADRIKKFYWKKIICNFGLPAVLVTDKGTQYASSSMANFCKEWGIKLN 532
Query: 388 KSSPYRPQTNGAVEAANKAIKVILQKTVKKRKA-WHEQLPNALWGYRTSIRTPTGATPYS 446
+ PQ+NG E+ANK I L+K ++ K W E+LP +W Y T+ + T TP+
Sbjct: 533 FTLVKHPQSNGQAESANKVILQGLKKRLEAAKGLWVEELPMVMWSYHTTPHSSTQETPFR 592
Query: 447 LVYGMEAVLPIELEVQSARII-RESQISEADWAKNYHLQLLGMDEKRLQAIHQTQVYQRR 505
+VYG +A++PI++ SAR++ + +++ ++ N Q +E R +A + + +RR
Sbjct: 593 IVYGSDAMIPIQVMEPSARVLFAQEEVNNSNLLNNLDFQ----EEVRARAQVKEEACKRR 648
Query: 506 MARHFNKK 513
+ ++ K
Sbjct: 649 AEQRYDTK 656
>IMGA|Medtr5g105390.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 42329455-42328322 E
EGN_Mt090430 20090702
Length = 244
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 256 GYYWLTMNADCVRHAQKCHEYQIFAKLQRQPPVNLNPIASPWPFATWGIDVIGKIHPKAS 315
GY+W TM D + C + Q + PP L + SPWPFA WGI
Sbjct: 4 GYFWPTMLKDAQDYVNLCDKCQRHGDMHLAPPAELTSLISPWPFAWWGI----------- 52
Query: 316 NGHQFILVAIDYFTKWIEAASYSVLNAKNAAQFVRTNILCQYGTPFEIITHNGFHFQSEF 375
VAIDY TKWIEA + + AKN +F + NIL ++G P +I++NG F +
Sbjct: 53 -------VAIDYSTKWIEAEPLAKITAKNVLRFFKRNILARFGVPALVISNNGSQFTDQK 105
Query: 376 F-DLLKQKKIQHHKSSPYRPQTNGAVEAAN----KAIKVILQKTVKKRKAWHEQLPNALW 430
F D L+ I+ +S PQ +G EAAN + I+ L T KR E+L LW
Sbjct: 106 FQDYLRNIDIKQSFTSVEHPQAHGLAEAANRVILRGIRRRLDATKTKRA---EELHTVLW 162
Query: 431 GYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSARIIRESQISEADWAKNYHLQLLGMDE 490
YRT+ + T +P+ L YG +AV+PIEL + RI E+ N +L +DE
Sbjct: 163 SYRTTPHSTTSESPFRLTYGTKAVIPIELTELTWRI--EADTDFPTNTVNLREKLEFVDE 220
Query: 491 KRLQAIHQTQVYQRRM 506
R AI + ++++
Sbjct: 221 VRNDAILRETALKQKI 236
>IMGA|AC135504_5.1 pol-polyprotein, putative AC135504.61 87442-87913
H EGN_Mt090430 20090702
Length = 142
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 207 GVLYKRSWNGLHLRCVDEGEAQTIMDSLHNGESGPHMHGIALARKIVNLGYYWLTMNADC 266
G LYKR + ++C+ E Q ++ +H+G G H+ +LARK++ GYYW TM D
Sbjct: 3 GTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDA 62
Query: 267 VRHAQKCHEYQIFAKLQRQPPVNLNPIASPWPFATWGIDVIGKIHPKASNGHQFILVAID 326
+ C + Q + PPV L + SPWPFA WGID++G PKA+ ++++VAI+
Sbjct: 63 EDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPF-PKATGQLKYLVVAIN 121
Query: 327 YFTKWIEAASYSVLNAKN 344
Y TKWIE + + AKN
Sbjct: 122 YSTKWIEVEPLAKIKAKN 139
>IMGA|Medtr3g061730.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 14035625-14034550 H
EGN_Mt090430 20090702
Length = 270
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 209 LYKRSWNGLHLRCVDEGEAQTIMDSLHNGESGPHMHGIALARKIVNLGYYWLTMNADCVR 268
LYKR LRC+ E E ++ +H G G H+ G ALA K++ GYYW TM D
Sbjct: 57 LYKRGRTNPLLRCLGEDETHLVLLEVHEGVCGSHIRGRALAAKLLRSGYYWPTMLHDSSD 116
Query: 269 HAQKCHEYQIFAKLQRQPPVNLNPIASPWPFATWGIDVIGKIHPKASNGHQFILVAIDYF 328
+KC + Q F+ + L + SPWPF W +D++G P A +F++V +DYF
Sbjct: 117 FVRKCDKCQKFSYKKHALAQKLTSVYSPWPFHIWAVDIVGPF-PLAPGQLEFLIVGVDYF 175
Query: 329 TKWIEAASYSVLNAKNAAQFVRTN 352
TKWIEA + + + A+ +A V N
Sbjct: 176 TKWIEAEAVAKITAERSANKVILN 199
>IMGA|Medtr3g169280.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
44103723-44102826 H EGN_Mt090430 20090702
Length = 258
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 217 LHLRCVDEGEAQTIMDSLHNGESGPHMHGIALARKIVNLGYYWLTMNADCVRHAQKCHEY 276
+H R E Q ++ +H+G G H+ ALA++I+ GYYW TM D + C +
Sbjct: 147 VHFRL---NETQEVLADVHDGICGQHLGAKALAKQILRAGYYWPTMLKDTQDYMNLCDKC 203
Query: 277 QIFAKLQRQPPVNLNPIASPWPFATWGIDVIGKIHPKASNGHQFILVAIDY 327
Q + PP +L + SPWPFA WGID++G PKA+ ++++VAIDY
Sbjct: 204 QRHGDMHLAPPADLTLVVSPWPFAWWGIDILGPF-PKAAGELKYLIVAIDY 253
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
9673679-9667953 H EGN_Mt090430 20090702
Length = 1435
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 111/246 (45%), Gaps = 17/246 (6%)
Query: 228 QTIMDSLHNGESGPHMHGIALARKIVNLGYYWLTMNADCVRHAQKCHEYQIFAKLQRQPP 287
+I+ H+ G H GI + ++ ++W ++ D C Q P
Sbjct: 1059 HSILQEFHSSPLGGH-SGITRTKARISAQFFWPNLHKDVTLFISTCLVCQQAKVATTLPA 1117
Query: 288 VNLNPIASP---WPFATWGIDVIGKIHPKASNGHQFILVAIDYFTKWIE----AASYSVL 340
L P++ P W +D + + P S+G+ + V ID +K+ + YS L
Sbjct: 1118 GLLQPLSIPSQIW--EDVAMDFVTGLPP--SHGYTVLFVVIDRLSKYCHLTPLKSDYSSL 1173
Query: 341 NAKNAAQFVRTNILCQYGTPFEIITHNGFHFQSEFFD-LLKQKKIQHHKSSPYRPQTNGA 399
+ AQ +++ +G P I++ F S+F+ L K + SS Y PQ++G
Sbjct: 1174 SV---AQAFLHSVVKLHGFPRSIVSDRDKVFLSKFWQHLFKLSGTTLNMSSAYHPQSDGQ 1230
Query: 400 VEAANKAIKVILQK-TVKKRKAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIE 458
EA NK I++ L+ T K+W LP A + Y TS + G TP+ VYG + ++
Sbjct: 1231 SEALNKCIELYLRCFTADNPKSWFTLLPWAEFWYNTSHHSSIGMTPFRAVYGRDPPQVVK 1290
Query: 459 LEVQSA 464
E+QSA
Sbjct: 1291 YEIQSA 1296
>IMGA|Medtr3g026360.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 7063133-7061964 H
EGN_Mt090430 20090702
Length = 356
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 108/278 (38%), Gaps = 51/278 (18%)
Query: 257 YYWLTMNADCVRHAQKCHEYQIFAKLQRQPPVNLNPIASPWPFATW---GIDVIGKIHPK 313
++W M D + +C Q ++P L P+ P P A W +D I + P
Sbjct: 14 FFWQGMRTDVQKFVSECSICQTTKYETKKPTGLLQPL--PLPSAIWEDLSLDFITGLPP- 70
Query: 314 ASNGHQFILVAIDYFTKWIEAASYSVLNAKNAAQFVRTNILCQYGTPFEIITHNGFHFQS 373
S+G ILV F+K A + L +A
Sbjct: 71 -SHGFSVILVVAGRFSK---GAHFGALPTNYSA--------------------------- 99
Query: 374 EFFDLLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVILQKTV-KKRKAWHEQLPNALWGY 432
F +L K + S+ Y PQT+G E N+ ++ ++ V K W+ LP A W Y
Sbjct: 100 -FKELFKLCGTKLRMSTAYHPQTDGQTEVLNRVLEQYIRSFVHNKPNQWYSFLPLAEWSY 158
Query: 433 RTSIRTPTGATPYSLVYGMEAVLPIELEVQSARIIRESQISEADWAKNYHLQLLGMDEKR 492
TSI + TG +P+ + Y E P + +I S+I D + +L + K+
Sbjct: 159 NTSIHSATGFSPFYVTYDKE---PPSI---PNYLIGSSRIEAVDTLLSSRQDILTILTKK 212
Query: 493 LQAIHQTQVYQRRMARHFNKKVKDRKLEEGCLVLKEIR 530
L Q RM + +KK +D G V ++R
Sbjct: 213 LLKA------QERMKHYADKKRRDITFNIGDFVYVKLR 244
>IMGA|Medtr3g068370.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 15932594-15933743 H
EGN_Mt090430 20090702
Length = 165
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 323 VAIDYFTKWIEAASYSVLNAKNAAQFVRTNILCQYGTPFEIITHNGFHFQS-EFFDLLKQ 381
+A++Y +KW EA + + + A + + I ++G P +I+ G HF S +F ++LK+
Sbjct: 77 IAVNYVSKWNEATASPTNDTRVAIKIFKQKIFPRFGVPRLVISDGGSHFISRQFENILKK 136
Query: 382 KKIQHHKSSPYRPQTNGAVEAANK 405
+ ++H ++PY PQT+G VE +N+
Sbjct: 137 RGVKHIVATPYHPQTSGQVEVSNR 160
>IMGA|Medtr6g028320.1 Polynucleotidyl transferase, Ribonuclease H
fold chr06_pseudomolecule_IMGAG_V3 6407540-6406225 E
EGN_Mt090430 20090702
Length = 379
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 135/341 (39%), Gaps = 28/341 (8%)
Query: 229 TIMDSLHNGESGPHMHGIALARKIVNLGYYWLTMNADCVRHAQKCHEYQIFAKLQRQPPV 288
TIM H+ + H G+ ++ + W D + + CH Q + +
Sbjct: 29 TIMTEFHSTPTAGH-SGLKPTLSRLSASFLWPGTYTDVKQFIRNCHTCQQNKYMLTKKQG 87
Query: 289 NLNPIASPWPFATWG---IDVIGKIHPKASNGHQFILVAIDYFTKWIEAASYSV-LNAKN 344
L P+ P P W +D I H AS H + V D +K++ + A++
Sbjct: 88 LLQPL--PIPDKVWDELTMDFI--THLPASFRHTVVWVICDRLSKYVHFIALPTKFAAQD 143
Query: 345 AAQFVRTNILCQYGTPFEIITHNGFHFQSEFF-DLLKQKKIQHHKSSPYRPQTNGAVEAA 403
A T I +G P I + F S+F+ +L + + S+ Y P+T+G E
Sbjct: 144 LANRFSTEICRLHGIPKTITSDRDPLFLSQFWKELFRTQGTIMQYSTTYHPETDGQTEVV 203
Query: 404 NKAIKVILQKTVKKR-KAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQ 462
N++++ L+ K W + L A + Y +S T +P+ +YG ++
Sbjct: 204 NRSLETYLRCFASDHPKHWFKFLHLAEFWYNSSFHTAIQMSPFEALYGRTPPTILDYVAN 263
Query: 463 SARIIRESQISEADWAKNYHLQLLGMDEKRLQAIHQTQVYQRRMARHFNKKVKDRKLEEG 522
+I Q++ + L L + +R + + + Q NKK +D G
Sbjct: 264 QTQI---PQLNANLQNRQTILTTLKQNLRRTRQLMEVQA---------NKKRRDCVFYPG 311
Query: 523 CLVLKEI---RQPIIDPR--GKFRPHWAGPYVLKKILSGGA 558
LVL + RQ + R K + GP+++ + + A
Sbjct: 312 DLVLLRLQPYRQQTVQRRVGPKLSKRFFGPFIVIRRIGSVA 352
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 129/321 (40%), Gaps = 25/321 (7%)
Query: 247 ALARKIVNLGYYWLTMNADCVRHAQKCHEYQIFAKLQRQPPVNLNPIASPWPF-ATWGID 305
LAR ++ + W + AD + C Q + + L+P+ P +D
Sbjct: 1044 TLAR--ISASFSWPGIYADVKSFVRTCQVCQQNKYITTKKQGLLHPLDIPEKVREDLSMD 1101
Query: 306 VIGKIHPKASNGHQFILVAIDYFTKWIEAASYSV-LNAKNAAQFVRTNILCQYGTPFEII 364
+ H S GH I V D TK+ + S A + A I +G P I+
Sbjct: 1102 FV--THLPNSFGHTTIWVVCDRLTKFAHFIALSAKFTAPDLASRFSVEIYRLHGIPKSIV 1159
Query: 365 THNGFHFQSEFF-DLLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVILQK-TVKKRKAWH 422
+ F S F+ +L K + S+ Y P+T+G E N++++ L+ T + K W+
Sbjct: 1160 SDRDTLFVSAFWKELFKIQGTTLRFSTAYHPETDGQTEVVNRSLETYLRCFTSEHPKQWY 1219
Query: 423 EQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSARIIRESQISEADWAKNYH 482
+ L A Y +S + TP+ +YG + + ++ QI H
Sbjct: 1220 KYLHLAELWYNSSFHSAIRMTPFEALYGRPPPRMTDYISGRSSLLSVDQILT-------H 1272
Query: 483 LQLLGMDEKRLQAIHQTQVYQRRMARHFNKKVKDRKLEEGCLVLKEI---RQPIIDPR-- 537
Q + + K H + ++RMA NK D +EG LVL ++ RQ + R
Sbjct: 1273 RQAIITNLK-----HNLHISKQRMAFQANKHRIDCAFQEGDLVLLKLQPYRQTTVQHRVS 1327
Query: 538 GKFRPHWAGPYVLKKILSGGA 558
K + GP+ + + + A
Sbjct: 1328 QKLAKRFFGPFTVHRRIGSMA 1348
>IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fold
AC233082.3 16225-8671 H EGN_Mt090430 20090702
Length = 695
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 52/323 (16%)
Query: 245 GIALARKIVNLGYYW---LTMNADCVRHAQKCHEYQIFAKLQRQPPVNLNPIASPWPFAT 301
G +AR + +YW T + V++ C + +K Q Q + L A P P
Sbjct: 198 GPTVAR--LAASFYWPGLYTAVKEFVKNCATCQQ----SKNQTQKKLGLLQ-ALPIPSQV 250
Query: 302 W---GIDVIGKIHPKASNGHQFILVAIDYFTKWIE-AASYSVLNAKNAAQFVRTNILCQY 357
W +D I H S GH I V D TK++ A S A++ A I +
Sbjct: 251 WEELTMDFI--THLPNSFGHTVIWVICDRLTKYVHFIALPSKFTAEDLANRFSVEICRLH 308
Query: 358 GTPFEIITHNGFHFQSEFF-DLLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVILQKTVK 416
G P II+ F S+F+ +L K + Q S+ Y P+T+G E N+ ++ L
Sbjct: 309 GIPKTIISDRDPLFLSKFWKELFKTQGTQLRFSTAYHPETDGQTEVVNRTLESYL----- 363
Query: 417 KRKAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSARIIRESQISEAD 476
+ +H +++ + T TP+ +YG + S+ I + + E+
Sbjct: 364 --RCFHN----------STVHSATQLTPFQALYGRPPPKIPDYVTGSSSI---TSLEESL 408
Query: 477 WAKNYHLQLLGMDEKRLQAIHQTQVYQRRMARHFNKKVKDRKLEEGCLVLKEI---RQPI 533
A++ LQ L + + +++M NKK +D G LVL + RQ
Sbjct: 409 QARHLVLQQLKKNLTK---------SRKQMEVQANKKRRDHTFNVGDLVLLRLQPYRQST 459
Query: 534 IDPRG--KFRPHWAGPY-VLKKI 553
+ R K + GP+ VL++I
Sbjct: 460 VQRRSSQKLAKRFFGPFHVLERI 482
>IMGA|Medtr3g059120.1 gag-pol polyprotein, related
chr03_pseudomolecule_IMGAG_V3 13234826-13235173 H
EGN_Mt090430 20090702
Length = 101
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 19/120 (15%)
Query: 447 LVYGMEAVLPIELEVQSARIIRESQISEADWAKNYHLQLLGMDEKRLQAIHQTQVYQRRM 506
+VYG +A++PIE+ +AR++ + ++ R Q + + ++R
Sbjct: 1 MVYGSDAMIPIEVMEPNARVLFAQE---------------EVNNTRAQV--KEEACKKRA 43
Query: 507 ARHFNKKVKDRKLEEGCLVLKEIRQPIIDPRGKFRPHWAGPYVLKKILSGGAVILTDLDG 566
AR ++ KV+ R ++G LVL+ ++P ++ GK W GP +K + GA L LDG
Sbjct: 44 ARRYDTKVRRRSFKQGDLVLR--KRPGVEQPGKLHARWEGPLRVKDEVGKGAYRLECLDG 101
>IMGA|Medtr4g073750.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 14702670-14703735 H
EGN_Mt090430 20090702
Length = 331
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 113/288 (39%), Gaps = 39/288 (13%)
Query: 230 IMDSLHNGESGPHMHGIALARKIVNLGYYWLTMNADCVRHAQKCHEYQIFAKLQRQPPVN 289
++ H+ G H ++I + YW M D + C Q+ P
Sbjct: 35 LLKDYHSSAVGGHSRFFRTYKRIYAI-IYWEGMRKDIQQIVATCETCQLNKYQTLSPTGL 93
Query: 290 LNPIASPWPFATW---GIDVIGKIHPKASNGHQFILVAIDYFTKWIEAASYSVLNAKNAA 346
L P+ P P W +D I + PKA +K+ A
Sbjct: 94 LQPL--PIPTQVWTDISMDFIEGL-PKAHGK-----------------------KSKDVA 127
Query: 347 QFVRTNILCQYGTPFEIITHNGFHFQSEFF-DLLKQKKIQHHKSSPYRPQTNGAVEAANK 405
+ ++ +G P I++ F S F+ +L + + SS Y PQT+G E AN+
Sbjct: 128 ESFIKEVIKLHGFPSTIVSDRDKIFLSHFWSELFRTAGTKLKFSSAYHPQTDGQTEVANR 187
Query: 406 AIKVILQ-KTVKKRKAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSA 464
++ L+ T K K W + L A + + T+ + TP+ +YG + P+ L+ +
Sbjct: 188 CLETYLRCLTGTKPKQWRKWLGWADFWFNTNYNSSLKQTPFKTLYGRDP--PLLLKGTTI 245
Query: 465 RIIRESQISEADWAKNYHLQLL-GMDEKRLQAIHQTQVYQRRMARHFN 511
S + E + + Q+L + + ++A+ Q + Y + R N
Sbjct: 246 ----PSLVEEVNVLTDERDQILHDLKQNLVKALEQMKAYADKSRRSVN 289
>IMGA|Medtr6g059710.1 GAG-POL precursor, putative
chr06_pseudomolecule_IMGAG_V3 10920548-10921569 E
EGN_Mt090430 20090702
Length = 99
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 219 LRCVDEGEAQTIMDSLHNGESGPHMHGIALARKIVNLGYYWLTMNADCVRHAQKCHEYQ 277
L+C+ E + +H G +G H+ G +LARK GY+WLTM D + + KC + Q
Sbjct: 30 LKCLVPSEVGYALADVHEGIAGQHLRGHSLARKEHRAGYFWLTMKYDAMEYVIKCDKCQ 88
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 32/221 (14%)
Query: 245 GIALARKIVNLGYYWLTMNADCVRHAQKCHEYQIFAKLQRQPPVNLNPIASPWPFATWGI 304
G ++++++ + T+ D CH FAK ++ P N +AS F
Sbjct: 497 GHVSPKRLIHMSQLYPTLTVDVHATCDICH----FAKQKKLPFSNSISVAS-IKFELLHF 551
Query: 305 DVIGKIHPKASNGHQFILVAIDYFTKWI-----EAASYSVLNAKNAAQFVRTNILCQYG- 358
D+ G + + + H++ L +D +++++ ++ S + KN ++T QY
Sbjct: 552 DIWGPLSITSIHNHRYFLTILDDYSRYVWIVLLKSKSEVSQHVKNFINLIQT----QYNI 607
Query: 359 TPFEIITHNGFHFQSEFFDLLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVILQKTVKKR 418
TP + + NG F F K I HH+S PQ NG VE ++ I V +
Sbjct: 608 TPKTVRSDNGPEFLLHSF--YASKGIVHHRSCVETPQQNGRVERKHQHI-----LNVGRA 660
Query: 419 KAWHEQLPNALWGY----------RTSIRTPTGATPYSLVY 449
+ +LP + W Y R + T +PY L++
Sbjct: 661 LLYQSKLPVSYWSYALLHATFIINRVTSPTLHNKSPYQLLH 701